AlignACE 3.0 10/20/99 AlignACE2 -i AG/AG_operons021_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944243110 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 AF0875 300 snRNP, putative #1 AF1157 163 phosphoribosylamine--glycine ligase (purD) #2 AF1260 207 phosphoribosylformylglycinamidine synthase I (purQ) #3 AF1269 300 A. fulgidus predicted coding region AF1269 #4 AF1270 33 transcriptional regulatory protein, ArsR family #5 AF1693 45 phosphoribosylformylglycinamidine cyclo-ligase (purM) #6 AF1941 201 conserved hypothetical protein #7 AF2399 278 rRNA methylase, putative #8 AF2400 22 A. fulgidus predicted coding region AF2400 #9 AF2425 85 methanol dehydrogenase regulatory protein (moxR) Motif 1 GCATGATTCCCTATAAAAGTTTCTTCGGATGGAGGCAATTAA 0 44 1 CCCTCCAGAATTATCTAAGGTTCGTTGCAGGAGGAGTTATTT 0 261 0 TATTTAAGCTTTGTTATTTTTACACAGGTAGAATTTGTAATT 1 58 1 CGATTATTTTCCGTTTTCGGTCAGCAGGGGCGGATATATAAT 1 114 0 GGTTTTTCTTTTTTTACTTTTCCCTAGACAGGACGATCTTAG 2 40 1 TTGAAAAGAATTCTTTTAGCTGGTGGGGCTGGTCTGATTCCT 2 86 0 TCTGCTCGGGCACGTCAATCTTCTCCGTAAGGTAAAAA 3 6 0 TAGCACATAGTCTTTTGTGGTTATCTGCTCGGGCACGTCAAT 3 29 0 GACTATGTGCTAGTTTATGGTGCTCTGTACGGTCTGAATAAA 3 59 1 GCTGCACCATTCTTCTCTGTCCCTGTGAGAGGTGAGAGAGCT 3 168 0 AGTATAAATCTCCTTGACGATCCTCTGGTTGGGATAGACAGT 3 238 1 CCGTTATAAGTTGCACCGTTGCGCAACCAAACA 4 1 1 CTCCAACGGGTCATCACCGCTCAGCAGACCCGTCAATCATCA 7 130 1 GCCGCTGGAGCCCGCCGCGCTTCCTGGCTACGCCACGACCCC 7 173 1 CACGACCCCTCGTTAAATGCTTCGCAGATAGGATATTAAATT 7 206 1 ATCAGTAGTTGGGGCTGCGGTGAAAGAACTTATCCCA 7 251 0 * ** * * * * * ** MAP Score: 12.3723 Motif 2 ATTAAAAACCAATGTGCGCGGGCCGGGATTCGAACCCGGG 0 81 1 TAACGCCTCGGAAGGGCGTTGTCCTACCGCTAGACTACCC 0 122 1 AGTTATTTAAAAATATCGCTGAACCCGAATTTTGCCAGAT 0 229 0 CTAAACTTTCAAAGCTGGCAGATCTTTAATT 2 1 0 TACTAGCACTAAAGAGTGCAGAACATCAACGCTGCCGACA 2 139 1 ACCTTACGGAGAAGATTGACGTGCCCGAGCAGATAACCAC 3 15 1 CCTTAGTTAGGATGATGGAAGCCCTTGAGCTTTTTGGATT 3 108 1 GGACAGAGAAGAATGGTGCAGCTCTCCGTCGCCTATATTT 3 188 1 AGTCTTTTTAAAAGGTTGCCCATCTGAAGT 5 0 0 AAAATTGAGGATAGCTTGCTGTTCTCAACTAAGGGTGGTT 6 51 0 TCAAGAAATAGAAGGTTGCACTTTTTTAACCGACGATAAA 7 25 0 GCGTAGCCAGGAAGCGCGGCGGGCTCCAGCGGCGTGATGA 7 166 0 GTTTTGGAAGAATGGTAGGAGGGTTAGAGCTATGGGAAAC 9 39 0 **** * * * * * * MAP Score: 11.0828 Motif 3 GAAAGGAATCAGACCAGCCCCACCAGCTAAA 2 83 1 TGACCCGAAGAGACCCGCCAGTCGTGGGTTC 7 96 0 GATTAATTATATATCCGCCCCTGCTGACCGA 1 109 1 AAGTTCTTTCACCGCAGCCCCAACTACTGAT 7 257 1 TAGGCGACGGAGAGCTGCACCATTCTTCTCT 3 192 0 CCGGGTTCGAATCCCGGCCCGCGCACATTGG 0 89 0 GGTTCAAATCCCACCGGCCCCATTTTTATTT 7 70 0 AATTAAAGATCTGCCAGCTTTGAAAGT 2 6 1 CGGAGAAGATTGACGTGCCCGAGCAGATAAC 3 21 1 GACCCGTTGGAGCTCTGACCCGAAGAGACCC 7 111 0 AACTAATACCAGCAAGGTTAACGGAA 6 5 1 TCATCACCGCTCAGCAGACCCGTCAATCATC 7 140 1 ACTTCAGATGGGCAACCTTTTAAAAA 5 5 1 ATTTAAAAATATCGCTGAACCCGAATTTTGC 0 234 0 ***** ***** MAP Score: 9.59992 Motif 4 TTGGTGGTATGTACAGAGCAAAGATTGTT 0 6 0 TTTGCCAGATGCTGAGAGCTTAAAGGCACACAA 0 206 0 GAAAATAATCGATGAGATAAAAAACGGT 1 145 1 GCACTAAAGAGTGCAGAACATCAACGCTGCCGA 2 144 1 TGACGTGCCCGAGCAGATAACCACAAAAGACTA 3 31 1 TATTCAGACCGTACAGAGCACCATAAACTAGCA 3 66 0 CCTCTCACAGGGACAGAGAAGAATGGTGCAGCT 3 178 1 AATATAGGCGACGGAGAGCTGCACCATTCTTCT 3 194 0 ACCACCCTTAGTTGAGAACAGCAAGCTATCCTC 6 52 1 GGTCTCTTCGGGTCAGAGCTCCAACGGGTCATC 7 112 1 * ******* ** MAP Score: 8.72173 Motif 5 GGAGCTTCAGGGTTAAAAATGTTTTCGACTT 0 177 1 TAGAATTTGTAATTAAAAACGAGGATTAATT 1 86 1 TAATCGATGAGATAAAAAACGGT 1 150 1 TCTAGGGAAAAGTAAAAAAAGAAAAACCTAA 2 37 0 GTACGGTCTGAATAAACAAAGAACCTTAGTT 3 85 1 TGGGATAGACAGTAGAAAATTTCCTGTTAAA 3 267 1 ATTTTACTAAAATAAAAATTGAGGATAGCTT 6 74 0 AAAATTTATAAGTAAAAAAATTTTACTAAAA 6 93 0 CCGACGATAAAATAGAAAAAGTAAAA 7 5 0 TTTTATCGTCGGTTAAAAAAGTGCAACCTTC 7 24 1 TTGACATTTAAATAAAAATGGGGCCGGTGGG 7 61 1 ********* * MAP Score: 8.17715 Motif 6 GCAATTAAAAACCAATGTGCGCGGGCCGGGATTCGAAC 0 78 1 AAGCTCCAGCAATGACAAGCGCGGGTAGTCTAGCGGTA 0 146 0 GCAACGAACCTTAGATAATTCTGGAGGGAAAGAAT 0 275 1 AGGATTAATTATATATCCGCCCCTGCTGACCGAAAACG 1 107 1 AATTAAAGATCTGCCAGCTTTGAAAGTTTAGG 2 4 1 TTCCTTTCTCTAAGATCGTCCTGTCTAGGGAAAAGTAA 2 53 0 GAGAAAGGAATCAGACCAGCCCCACCAGCTAAAAGAAT 2 81 1 AGTGCAGAACATCAACGCTGCCGACACGGAAAAAGCTT 2 153 1 TACGGAGAAGATTGACGTGCCCGAGCAGATAACCACAA 3 19 1 AACCTTTTAAAAAGACTTTTCCGACTTGAATC 5 23 1 ACATTTAAATAAAAATGGGGCCGGTGGGATTTGAACCC 7 64 1 TCTGACCCGAAGAGACCCGCCAGTCGTGGGTTCAAATC 7 91 0 CGGCGTGATGATTGACGGGTCTGCTGAGCGGTGATGAC 7 139 0 * *** ***** * MAP Score: 8.04475 Motif 7 CCCGGGTTCGAATCCCGGCCCGCGCACATTGGTTTTT 0 84 0 ATTCTTTCCCTCCAGAATTATCTAAGG 0 283 0 ATTAATTATATATCCGCCCCTGCTGACCGAAAACGGA 1 110 1 GAAAGGAATCAGACCAGCCCCACCAGCTAAAAGAATT 2 83 1 GTGGTTATCTGCTCGGGCACGTCAATCTTCTCCGTAA 3 18 0 CAGATTGCAAGCTCTCTCACCTCTCACAGGGACAGAG 3 159 1 CCAGTCGTGGGTTCAAATCCCACCGGCCCCATTTTTA 7 73 0 GCTCTGACCCGAAGAGACCCGCCAGTCGTGGGTTCAA 7 94 0 TCATCACGCCGCTGGAGCCCGCCGCGCTTCCTGGCTA 7 166 1 TTTGGGATAAGTTCTTTCACCGCAGCCCCAACTACTG 7 249 1 GTTTCCCATAGCTCTAACCCTCCTACCATTCTTCCAA 9 39 1 * ** **** * * * MAP Score: 6.05055 Motif 8 GGAGGCAATTAAAAACCAATGTGCGCGGGCCGGGATTCGA 0 74 1 TAACGCCTCGGAAGGGCGTTGTCCTACCGCTAGACTACCC 0 122 1 ACCTTACGGAGAAGATTGACGTGCCCGAGCAGATAACCAC 3 15 1 CCGAGCAGATAACCACAAAAGACTATGTGCTAGTTTATGG 3 39 1 CCTTAGTTAGGATGATGGAAGCCCTTGAGCTTTTTGGATT 3 108 1 TTGCGCTGCAAAATATAGGCGACGGAGAGCTGCACCATTC 3 198 0 CGAATCGCTTGATTTTTAAAGAGCATGAGCAAAAAACAAC 6 170 1 TTGACATTTAAATAAAAATGGGGCCGGTGGGATTTGAACC 7 61 1 CAGACCCGTCAATCATCACGCCGCTGGAGCCCGCCGCGCT 7 154 1 GTTTTGGAAGAATGGTAGGAGGGTTAGAGCTATGGGAAAC 9 39 0 ** * * * ** * ** MAP Score: 5.1812 Motif 9 AACAATCTTTGCTCTGTACATACCACCAATTCTAGCA 0 6 1 TTGTGTGCCTTTAAGCTCTCAGCATCTGGCAAAATTCGGGT 0 206 1 CCTGATCAAACTCTAAACTTTAAAGACATTCGAAAG 1 5 1 CAAATCGTATTTAAGCTTTGTTATTTTTACACAGGTAGAAT 1 51 1 CCGCAATCTTTTAAGCTTTTTCCGTGTCGGCAGCGTTGATG 2 162 0 TGCTAGTTTATGGTGCTCTGTACGGTCTGAATAAACAAAGA 3 66 1 ATGGAAGCCCTTGAGCTTTTTGGATTGGGCAGCATTACAGA 3 122 1 TGCAAGCTCTCTCACCTCTCACAGGGACAGAGAAGAATGGT 3 164 1 AGAAGAATGGTGCAGCTCTCCGTCGCCTATATTTTGCAGCG 3 194 1 ATCTCCTTGACGATCCTCTGGTTGGGATAGACAGTAGAAAA 3 245 1 GGTTGTTTTTTGCTCATGCTCTTTAAAAATCAAGCGAT 6 173 0 GATGACCCGTTGGAGCTCTGACCCGAAGAGACCCGCCAGTC 7 104 0 TGACGTTTCCCATAGCTCTAACCCTCCTACCATTCTTCCAA 9 35 1 * ****** * * * MAP Score: 4.49979 Motif 10 AATAACTCCTCCTGCAACGAACCTTAGATAATTCTGG 0 262 1 TTAGAGAAAGGAATCAGACCAGCCCCACCAGCTAAAA 2 78 1 CGGTAAGCAATCAACCGCAATCTTTTA 2 190 0 TTGACGTGCCCGAGCAGATAACCACAAAAGACTATGT 3 30 1 ATTGCAAGCTCTCTCACCTCTCACAGGGACAGAGAAG 3 162 1 AGAGAAGAATGGTGCAGCTCTCCGTCGCCTATATTTT 3 192 1 CCGTTATAAGTTGCACCGTTGCGCAACCAAACA 4 9 1 TTAACTACCTCATTCAACCACCCTTAGTTGAGAACAG 6 36 1 CCATCATACACTATCATCATACACCGAATCGCTTGAT 6 146 1 GCCAGTCGTGGGTTCAAATCCCACCGGCCCCATTTTT 7 74 0 GGAGCTCTGACCCGAAGAGACCCGCCAGTCGTGGGTT 7 97 0 GAGCTCCAACGGGTCATCACCGCTCAGCAGACCCGTC 7 127 1 GCAGACCCGTCAATCATCACGCCGCTGGAGCCCGCCG 7 153 1 GGGATAAGTTCTTTCACCGCAGCCCCAACTACTGAT 7 252 1 * *** * * ** * * MAP Score: 4.42684 Motif 11 AAAGTTTCTTCGGATGGAGGCAATTAAAAACCAAT 0 59 1 GTTCGAATCCCGGCCCGCGCACATTGGTTTTTAAT 0 81 0 GCTAACGCCTCGGAAGGGCGTTGTCCTACCGCTAG 0 120 1 TACCGCTAGACTACCCGCGCTTGTCATTGCTGGAG 0 146 1 CGTTTTCGGTCAGCAGGGGCGGATATATAATTAAT 1 110 0 ATTCTTTTAGCTGGTGGGGCTGGTCTGATTCCTTT 2 84 0 TTGTGGTTATCTGCTCGGGCACGTCAATCTTCTCC 3 22 0 GGTTCAAATCCCACCGGCCCCATTTTTATTTAAAT 7 66 0 TTTGAACCCACGACTGGCGGGTCTCTTCGGGTCAG 7 93 1 AATCATCACGCCGCTGGAGCCCGCCGCGCTTCCTG 7 164 1 AGTTCTTTCACCGCAGCCCCAACTACTGAT 7 258 1 * ** ***** ** MAP Score: 4.22989 Motif 12 TAAAAACCAATGTGCGCGGGCCGGGATTCGAACC 0 83 1 TTCCGAGGCGTTAGCCCGGGTTCGAATCCCGGCC 0 101 0 TTCCGTTTTCGGTCAGCAGGGGCGGATATATAAT 1 114 0 AGCTGGTGGGGCTGGTCTGATTCCTTTCTCTAAG 2 77 0 AAAAGAATTCTTTTAGCTGGTGGGGCTGGTCTGA 2 91 0 GGCACGTCAATCTTCTCCGTAAGGTAAAAA 3 6 0 TTTGTGGTTATCTGCTCGGGCACGTCAATCTTCT 3 24 0 GCTAGTTTATGGTGCTCTGTACGGTCTGAATAAA 3 67 1 TCTCCTTGACGATCCTCTGGTTGGGATAGACAGT 3 246 1 CCGTTATAAGTTGCACCGTTGCGCAACCAAACA 4 9 1 TTAAATAAAAATGGGGCCGGTGGGATTTGAACCC 7 68 1 ATGACCCGTTGGAGCTCTGACCCGAAGAGACCCG 7 110 0 GGTCATCACCGCTCAGCAGACCCGTCAATCATCA 7 138 1 TAGCCAGGAAGCGCGGCGGGCTCCAGCGGCGTGA 7 169 0 CTCGTTAAATGCTTCGCAGATAGGATATTAAATT 7 214 1 * ***** ** ** MAP Score: 1.89726 Motif 13 GTTCGAATCCCGGCCCGCGCACATTGGTTTTTAA 0 82 0 GCCGGGATTCGAACCCGGGCTAACGCCTCGGAAG 0 102 1 AATTATATATCCGCCCCTGCTGACCGAAAACGGA 1 113 1 GGAATCAGACCAGCCCCACCAGCTAAAAGAATTC 2 87 1 GAAGATTGACGTGCCCGAGCAGATAACCACAAAA 3 25 1 CACGCCGCTGGAGCCCGCCGCGCTTCCTGGCTAC 7 170 1 CGCTTCCTGGCTACGCCACGACCCCTCGTTAAAT 7 190 1 TCTTTCACCGCAGCCCCAACTACTGAT 7 261 1 TCCCATAGCTCTAACCCTCCTACCATTCTTCCAA 9 42 1 * ***** ** ** MAP Score: 1.76842 Motif 14 CCTGGCTACGCCACGACCCCTCGTTAAATGCT 7 195 1 CTACCTCATTCAACCACCCTTAGTTGAGAACA 6 40 1 GGTTCAAATCCCACCGGCCCCATTTTTATTTA 7 69 0 CCGCTGGAGCCCGCCGCGCTTCCTGGCTACGC 7 174 1 TCAAGGGCTTCCATCATCCTAACTAAGGTTCT 3 104 0 ACTCCTCCTGCAACGAACCTTAGATAATTCTG 0 266 1 CAGACCAGCCCCACCAGCTAAAAGAATTCTTT 2 92 1 CTCAGCAGACCCGTCAATCATCACGCCGCTGG 7 149 1 TCTGTACATACCACCAATTCTAGCATGATTCC 0 22 1 TTTTTAATTGCCTCCATCCGAAGAAACTTTTA 0 57 0 CCGAAGAGACCCGCCAGTCGTGGGTTCAAATC 7 91 0 GTCAGAGCTCCAACGGGTCATCACCGCTCAGC 7 123 1 ACGGAGAGCTGCACCATTCTTCTCTGTCCCTG 3 185 0 TCTAACCCTCCTACCATTCTTCCAAAACACAC 9 51 1 AGTTCTTTCACCGCAGCCCCAACTACTGAT 7 258 1 CGGTAAGCAATCAACCGCAATCTTTTAAG 2 188 0 GTGCAGCTCTCCGTCGCCTATATTTTGCAGCG 3 203 1 ****** ** ** MAP Score: 1.61808 Motif 15 ATTGGTTTTTAATTGCCTCCATCCGAAGAAACTTTT 0 58 0 CTAGCGGTAGGACAACGCCCTTCCGAGGCGTTAGCC 0 119 0 ATTCTTTCCCTCCAGAATTATCTAAG 0 284 0 ATTAATTATATATCCGCCCCTGCTGACCGAAAACGG 1 110 1 AATTAAAGATCTGCCAGCTTTGAAAGTTTAGGT 2 7 1 AAAGGAATCAGACCAGCCCCACCAGCTAAAAGAATT 2 84 1 GGAGAAGATTGACGTGCCCGAGCAGATAACCACAAA 3 22 1 TTCTTTGTTTATTCAGACCGTACAGAGCACCATAAA 3 72 0 ATTTTCTACTGTCTATCCCAACCAGAGGATCGTCAA 3 251 0 GTCTTTTTAAAAGGTTGCCCATCTGAAGT 5 3 0 CTTTTAAAAAGACTTTTCCGACTTGAATC 5 26 1 TTTACTTATAAATTTTATCCTTCAGATTATTGTGAG 6 108 1 TTTAAATAAAAATGGGGCCGGTGGGATTTGAACCCA 7 67 1 CTGCTGAGCGGTGATGACCCGTTGGAGCTCTGACCC 7 121 0 *** * *** * ** MAP Score: 1.37164 Motif 16 CCGGGTTCGAATCCCGGCCCGCGCACATTGGTTT 0 86 0 TGTGCCTTTAAGCTCTCAGCATCTGGCAAAATTC 0 209 1 AATTAAAGATCTGCCAGCTTTGAAAGTTTA 2 6 1 CCTTTCTCTAAGATCGTCCTGTCTAGGGAAAAGT 2 55 0 TGTGGTTATCTGCTCGGGCACGTCAATCTTCTCC 3 22 0 CAATCCAAAAAGCTCAAGGGCTTCCATCATCCTA 3 115 0 ACAGATTGCAAGCTCTCTCACCTCTCACAGGGAC 3 158 1 TGCACCATTCTTCTCTGTCCCTGTGAGAGGTGAG 3 174 0 AGAATGGTGCAGCTCTCCGTCGCCTATATTTTGC 3 197 1 GGTTGTTTTTTGCTCATGCTCTTTAAAAATCAAG 6 177 0 GTGGGTTCAAATCCCACCGGCCCCATTTTTATTT 7 70 0 TTCGGGTCAGAGCTCCAACGGGTCATCACCGCTC 7 118 1 AAGCGCGGCGGGCTCCAGCGGCGTGATGATTGAC 7 161 0 TTTTGGGATAAGTTCTTTCACCGCAGCCCCAACT 7 248 1 CGTTTCCCATAGCTCTAACCCTCCTACCATTCTT 9 38 1 ***** * **** MAP Score: 0.395832 Motif 17 CTCGGAAGGGCGTTGTCCTACCGCTAGACTACCC 0 128 1 ATATTTTTAAATAACTCCTCCTGCAACGAACCTT 0 253 1 AGGATTAATTATATATCCGCCCCTGCTGACCGAA 1 107 1 AGAGAAAGGAATCAGACCAGCCCCACCAGCTAAA 2 80 1 TAAAGAGTGCAGAACATCAACGCTGCCGACACGG 2 148 1 ACAGATTGCAAGCTCTCTCACCTCTCACAGGGAC 3 158 1 AGAATGGTGCAGCTCTCCGTCGCCTATATTTTGC 3 197 1 GTGGGTTCAAATCCCACCGGCCCCATTTTTATTT 7 70 0 TCTTCGGGTCAGAGCTCCAACGGGTCATCACCGC 7 116 1 GGAAGCGCGGCGGGCTCCAGCGGCGTGATGATTG 7 163 0 TTTTGGGATAAGTTCTTTCACCGCAGCCCCAACT 7 248 1 GACGTTTCCCATAGCTCTAACCCTCCTACCATTC 9 36 1 ** **** **** MAP Score: 0.213723