AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_operons033_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243506
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF1158	163	ATP synthase, subunit E, putative
#1	AF1160	27	H+-transporting ATP synthase, subunit K (atpK-1)
#2	AF1168	25	H+-transporting ATP synthase, subunit D (atpD)

Motif 1
         ACCGTTTTTTATCTCATCGATTA	0	1	1
TTTTATCTCATCGATTATTTTCCGTTTTCGGT	0	16	1
TAATTAATCCTCGTTTTTAATTACAAATTCTA	0	65	1
GCCTTACAAATCGTATTTAAGCTTTGTTATTT	0	106	0
TGTAAGGCTTTCGAATGTCTTTAAAGTTTAGA	0	130	1
CTTTAAAGTTTAGAGTTTGATCAGG       	0	148	1
          **** *** ***
MAP Score: 3.99914