AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_operons056_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944244058
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF1117	62	DNA-directed RNA polymerase, subunit E' (rpoE1)
#1	AF1118	111	A. fulgidus predicted coding region AF1118

Motif 1
TTCTTAGTTAAATTTATATTGCTTCCCGACCCAGC	0	16	1
CTCAACTTAAAGCTTATATTGGTTAAAGAACATCA	1	80	1
TTTTTTGCTCAGATAAAAATGCTCACTCTAATAAT	1	39	1
CTGAGCAAAAAATTTAAATTATTGAAGTGTTATGA	1	16	0
ATATAAATTTAACTAAGAATGTAAA          	0	0	0
TATAAGCTTTAAGTTGAGTTGATGATTATTAGAGT	1	63	0
          ** * * **** * *
MAP Score: 3.17035