AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_operons056_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944244059
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF1117	62	DNA-directed RNA polymerase, subunit E' (rpoE1)
#1	AF1118	111	A. fulgidus predicted coding region AF1118

Motif 1
AAATTTAACTAAGAATGTAAA         	0	1	0
GGGAAGCAATATAAATTTAACTAAGAATGT	0	13	0
GCTCTGTCATAACACTTCAATAATTTAAAT	1	10	1
TATCTGAGCAAAAAATTTAAATTATTGAAG	1	24	0
TCTAATAATCATCAACTCAACTTAAAGCTT	1	65	1
ATGTTCTTTAACCAATATAAGCTTTAAGTT	1	83	0
ATATTGGTTAAAGAACATCATATAGC    	1	95	1
          **********
MAP Score: 3.04396