AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_operons060_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944244129
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF2070	63	conserved hypothetical protein
#1	AF2071	60	N-acetyl-gamma-glutamyl-phosphate reductase (argC)

Motif 1
CCCCACCAAAAGGAAATGGTAGGGCAGGCA	0	26	1
ATGGTAGGGCAGGCATCGGTGAGAGGAGCA	0	41	1
TCGCCATCTCAGAAAACTCTTTATTTTGCC	1	24	1
         GAGGAAAAGGTTAAGAGGCAA	1	49	0
          **********
MAP Score: 4.53017

Motif 2
TTTTACACAGCCCCACCAAAAGGAAATGGTAGG	0	16	1
CCGATGCCTGCCCTACCATTTCCTTTTGGTGGG	0	27	0
  CATGCTCCTCTCACCGATGCCTGCCCTACCA	0	42	0
     AGCATCCTCAACTTTCGCCATCTCAGAA	1	5	1
TATTTTGCCTCTTAACCTTTTCCTC        	1	45	1
          *** *** ** **
MAP Score: 4.28688