AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_operons063_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944244160
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF0260	30	glutamyl-tRNA synthetase (gltX)
#1	AF1731	21	A. fulgidus predicted coding region AF1731
#2	AF1778	105	stage V sporulation protein (spoVG)
#3	AF1779	57	2-hydroxyacid dehydrogenase, putative

Motif 1
  CTTTATATTTCTCAACTTCCCAGGTGGGCC	0	8	1
        AATTTTTACCTCACTTTTGCC   	1	2	1
GAGCGTGGTAATTTAATCTAACGTTTCCTGCA	2	23	1
GCAATCAAAATTCTTATATACCACTTTGTTTG	2	52	1
CCTTTCAAATTTCGTTACTCTCAAACAAAGTG	2	73	0
          TTCTAACCCTCCTTTCAAATTT	2	93	0
CTTCAAAACCTTTTTATCTTTTCTGGGTTCAA	3	28	1
CTTTTCTGGGTTCAATTCTGTC          	3	45	1
          ****** ** **
MAP Score: 2.98133