AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_operons073_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944244303
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF2038	54	conserved hypothetical protein
#1	AF2326	72	translation initiation factor eIF-2, subunit beta, putative

Motif 1
AGAATTTTAACCTGAAGCAGAGGTGGGAAC	0	34	1
        GCCTCATAGTGGTCATGCAGTA	1	2	1
AAAAAGGGTTTTCGGAGCGGTAAGTATTTA	1	32	1
TAAGTATTTATCCAAAGCGGCAGAGTATCG	1	52	1
          **********
MAP Score: 2.40717

Motif 2
AATTTTAACCTGAAGCAGAGGTGGGAAC  	0	36	1
ATAGTGGTCATGCAGTAAAAAAGGGTTTTC	1	15	1
GGGTTTTCGGAGCGGTAAGTATTTATCCAA	1	37	1
ATTTATCCAAAGCGGCAGAGTATCG     	1	57	1
          **********
MAP Score: 0.574068