AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_operons078_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944244356
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF0074	261	biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase (birA)
#1	AF0075	26	conserved hypothetical protein
#2	AF0700	41	aspartate kinase (lysC)
#3	AF0703	38	A. fulgidus predicted coding region AF0703
#4	AF0735	50	conserved hypothetical protein

Motif 1
CCTTAAAAATGGGCCCGCGGGGGTTCGAAC	0	134	1
GATAAGCGAGAGGTCCGGGGTTCGAACCCC	0	153	0
AGCTGACTGAGGGCCCGTGGCTCAGCCTGG	0	198	0
          **********
MAP Score: 4.3389

Motif 2
AGCTGCCTTAATCGATTTCTCCTCTCTTCGATTTTTAAT	0	18	1
GAGGTCCGGGGTTCGAACCCCCGCGGGCCCATTTTTAAG	0	135	0
GGCCCGCGGGGGTTCGAACCCCGGACCTCTCGCTTATCA	0	145	1
TCCTCAAGCTGACTGAGGGCCCGTGGCTCAGCCTGGTTA	0	195	0
   CGCAACCGTTTTTATCTCCGCCGATTTAAAGTTCAG	3	12	0
AAAAGTTTAAGTTCTTTTCTCCGAAACTCTTTTT     	4	26	1
          * *     *****  * **
MAP Score: 0.106554