AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_profile013_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944244670
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF0215	33	conserved hypothetical protein
#1	AF0790	97	conserved hypothetical protein
#2	AF1542	135	conserved hypothetical protein
#3	AF2278	49	pyruvate formate-lyase activating enzyme (act-4)

Motif 1
TGAGAACAGGCGTCATCAGCCTTAGCGGCGG	2	23	1
TGATGGCGTCCACCTTCAACCGCCGCTAAGG	2	42	0
TGAAGGTGGACGCCATCACCCATACCGATTC	2	55	1
          ******** **
MAP Score: 2.85746

Motif 2
TTTTGAATTGAACCATACTTATTTTTTTCCG	1	17	1
CCCTATCGCTCTCCACTCTTACCTCTCGGAA	1	43	0
     ACTCTCACCTCTCTGAGAACAGGCGT	2	5	1
GAACAGGCGTCATCAGCCTTAGCGGCGGTTG	2	26	1
AGGTGGACGCCATCACCCATACCGATTCAAT	2	58	1
          ****** ****
MAP Score: 1.86789

Motif 3
      AAACTTTTTTAACCTCCTCTTACAATTTT	0	4	1
TTTAACCTCCTCTTACAATTTTCCCC         	0	17	1
    TGAGTTTTTTTGAATTGAACCATACTTATTT	1	6	1
ATAAAACACTTGGTTTAACTGAAGTCA        	1	80	1
CTCTCACCTCTCTGAGAACAGGCGTCATCAGCCTT	2	11	1
ATTAGCCCGGTATTTAAACGGAATCCTTATAAATC	2	87	1
ATCAGCAAACTATTTTAATTTGCCTTAAACATTAG	3	14	0
          * *** *** * * *
MAP Score: 1.59852