AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_profile013_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944244672
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF0215	33	conserved hypothetical protein
#1	AF0790	97	conserved hypothetical protein
#2	AF1542	135	conserved hypothetical protein
#3	AF2278	49	pyruvate formate-lyase activating enzyme (act-4)

Motif 1
TTTTAACCTCCTCTTACAATTTTCCCC     	0	16	1
TCGCTCTCCACTCTTACCTCTCGGAAAAAAAT	1	37	0
TTTATTTATTCCCCTATCGCTCTCCACTCTTA	1	53	0
         ACTCTCACCTCTCTGAGAACAGG	2	1	1
GACGCCATCACCCATACCGATTCAATTAGCCC	2	63	1
TTAAACGGAATCCTTATAAATCGAGAACCGAT	2	100	1
          ********  **
MAP Score: 3.73862

Motif 2
AAGAGTGGAGAGCGATAGGGGAATAAATAA	1	54	1
AGGCGTCATCAGCCTTAGCGGCGGTTGAAG	2	30	1
GGACGCCATCACCCATACCGATTCAATTAG	2	62	1
TAAATCGAGAACCGATATCGAAAATCGAT 	2	116	1
          **********
MAP Score: 2.85259

Motif 3
CGCTCTCCACTCTTACCTCTCGGAAAAAAATAA	1	35	0
TGTTTTATTTATTCCCCTATCGCTCTCCACTCT	1	55	0
        ACTCTCACCTCTCTGAGAACAGGCG	2	2	1
ACAGGCGTCATCAGCCTTAGCGGCGGTTGAAGG	2	28	1
GTGGACGCCATCACCCATACCGATTCAATTAGC	2	60	1
     ATCGATTTTCGATATCGGTTCTCGATTT	2	117	0
          *** ** ** ***
MAP Score: 1.35823