AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_sum_all037_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247261
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF1158	163	ATP synthase, subunit E, putative
#1	AF1160	27	H+-transporting ATP synthase, subunit K (atpK-1)
#2	AF1168	25	H+-transporting ATP synthase, subunit D (atpD)

Motif 1
CGTTTTTAATTACAAATTCTACCTGTGTAAA	0	76	1
GTGTAAAAATAACAAAGCTTAAATACGATTT	0	100	1
TCGAAAGCCTTACAAATCGTATTTAAGCTTT	0	113	0
TTCGAATGTCTTTAAAGTTTAGAGTTTGATC	0	139	1
         AAACAATTTTTAGAGGTGACAG	2	1	1
          ******** **
MAP Score: 2.6971