AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_sum_all057_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247771
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF2079	33	A. fulgidus predicted coding region AF2079
#1	AF2081	111	A. fulgidus predicted coding region AF2081

Motif 1
         GCTCTCAAATTTAATTTTTTA	0	1	1
       TCCTCCTTAATTTTTACCCTGAT	1	3	1
TTAATTTTTACCCTGATTTTGGCTTCTGAT	1	16	1
TGATTTTGGCTTCTGATTTTATTTTCAAAT	1	29	1
          **********
MAP Score: 2.70698

Motif 2
CTCTCAAATTTAATTTTTTATGAGGAAAGT	0	11	1
    TCCTCCTTAATTTTTACCCTGATTTT	1	6	1
GCTTCTGATTTTATTTTCAAATATTATATA	1	37	1
          **********
MAP Score: 0.555033