AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_sum_all060_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247812
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF0623	70	DNA ligase (lig)
#1	AF2097	59	conserved hypothetical protein

Motif 1
    TGATATAACTAAGCAGGAAGTATTAA	0	6	1
TATTTTATTGAACCAGGCAGACTAAAATCG	0	50	1
AATCTTTTACACCTAAACAGTTTTTATTTT	1	11	1
          **********
MAP Score: 3.84689

Motif 2
TGATATAACTAAGCAGGAAGTATTAAAAGG	0	10	1
TATTTTATTGAACCAGGCAGACTAAAATCG	0	50	1
          **********
MAP Score: 1.09206

Motif 3
        TGATATAACTAAGCAGGAAGTAT	0	2	1
CTAAGCAGGAAGTATTAAAAGGTTGGCGATA	0	18	1
CTGGTTCAATAAAATACTATCGCCAACCTTT	0	35	0
TGAACCAGGCAGACTAAAATCG         	0	58	1
TTTTATCTCTAAAATAAAAACTGTTTAGGTG	1	20	0
TTTATTTTAGAGATAAAAAAGGCTTGTGGTG	1	33	1
          *** *******
MAP Score: 0.386534