AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_sum_all086_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248270
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF0887	128	ribose ABC transporter, ATP-binding protein (rbsA-1)
#1	AF1006	300	ABC transporter, ATP-binding protein

Motif 1
ATATCTGTTGATTGGTATCACAGAAGA        	0	2	0
CGGTTTATCTCTGAGTCTTTCAATAAGTTGAAATA	0	61	0
AGAGTTTCCAAAGGCTATCACCTCAGCCTGAAGGT	0	96	0
AATTTTTATCCACATAATCTCCCGAGTTTGTGTTA	1	13	1
TAGTTTTTCACTGACTATTACACTACATCTCATGC	1	116	0
CAGTGAAAAACTAAAACTCACAAAATATTCTTACA	1	138	1
ATGGAAAAGGCTACTTATCACCAGACCGAGTTGGC	1	177	1
AAGGTTCCTTCTAACTCTCAAAATAAATTACCAAA	1	212	1
TTACCAAATCCAATCAATTAACCGACCCCAGTGAC	1	239	1
CCAGTGACAACAATTTATTAAATTAAATTTTCCAT	1	266	1
          **   *******  *
MAP Score: 4.81556

Motif 2
TGATACCAATCAACAGATATCACGATACAG	0	17	1
GTTTCTGCAGCAAAATATTTCAACTTATTG	0	46	1
          CAAAATTTTTATCCACATAA	1	0	1
TTTTTAATATCAAAACTTATACAAAATAAC	1	77	0
CTAAAACTCACAAAATATTCTTACAGAACA	1	148	1
TTCTAACTCTCAAAATAAATTACCAAATCC	1	220	1
          **********
MAP Score: 3.77346

Motif 3
          TCTTCTGTGATACCAATCAA	0	0	1
ATAATCTCCCGAGTTTGTGTTAAAATGAAA	1	26	1
GGTTTCATGTTATTTTGTATAAGTTTTGAT	1	69	1
TGTAGTGTAATAGTCAGTGAAAAACTAAAA	1	124	1
TCTGTAAGAATATTTTGTGAGTTTTAGTTT	1	145	0
GCCTTTTCCATGTTCTGTAAGAATATTTTG	1	158	0
TTTGGTAATTTATTTTGAGAGTTAGAAGGA	1	217	0
TAATTGATTGGATTTGGTAATTTATTTTGA	1	229	0
          **********
MAP Score: 3.61847