AlignACE 3.0 10/20/99 AlignACE2 -i AP/AP_fusions005_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944248632 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 APE0471 300 356aa long hypothetical transport ATP-binding protein #1 APE1255 300 253aa long hypothetical ABC transporter ATP-binding protein #2 APE1635 73 354aa long hypothetical ABC transporter ATP-binding protein #3 APE1732 300 358aa long hypothetical transporter ATP-binding protein #4 APE2579 175 333aa long hypothetical ABC transporter ATP-binding protein Motif 1 CCCCTGAAAACTGGTTTGCCGTGGCAGACATTTGG 0 109 1 TAGCTTTAAGGGAGCTAAGCGAGTCAAATAATCTC 0 190 0 GAGGATGGCGGACAGGGTGGCGGTGATCGAG 1 6 1 CGGACAGGGTGGCGGTGATCGAGGACGGCAGGCTA 1 18 1 ATCGAGGACGGCAGGCTACGGGGGGTCTACAGCCC 1 35 1 ACAGCCCCTCAAGGATAGCCGGGGCCACAGGCTTC 1 63 1 CAGGCTTCGGAGAGGTTGAGGCGGAGAAGGCTGTT 1 90 1 TTGAGGCGGAGAAGGCTGTTGAGGCTGTGATGAGG 1 105 1 GCTGTTGAGGCTGTGATGAGGAGGATCCTGGATGA 1 119 1 TGAGGAGGATCCTGGATGACGCGGAACGCCGTCTA 1 135 1 ACGCGGAACGCCGTCTAAGGGAGGCTGAAGACAGG 1 153 1 GAGGCTGAAGACAGGTTCAGGAGGGGGGAGGTCGG 1 173 1 CTCGGGTGAAAGCGCTGAGGGAGGCGGTGCGGGAA 1 234 1 CTAGGAATCACGGGCTAGACGCGGATGGG 1 281 1 CTGGTGTTTATGTTCCTGGCGAGGCGCTACCTCGT 2 20 1 TCGTGACCATGTGGGCTATGGCGGCGAGGTGA 2 51 1 TAACGATAGGCGGGCTAAACGAGGACTACTCGCCT 3 107 1 TTATCTACGACTATGTAACCGGGGGTTATGGGGGA 3 152 1 TGTAACCGGGGGTTATGGGGGAGGAGCCTTCGTGC 3 165 1 CCATTAGTATGACGACTATGGAGGCTGCTAGGTGC 3 198 0 TCATACTAATGGCTATACAGGTGGCAGCGATAACA 3 221 1 ACACGAGGACCTCGCCCGGGGCGGACCATATATTA 4 71 0 * *** * ** *** MAP Score: 30.8784 Motif 2 ACGGCAAACCAGTTTTCAGGGGTACGAGGGTTCTGCTAGGCTAGG 0 86 0 GAGGATGGCGGACAGGGTGGCGGTGATCGAGGACG 1 0 1 CGGTGATCGAGGACGGCAGGCTACGGGGGGTCTACAGCCCCTCAA 1 30 1 AAGGATAGCCGGGGCCACAGGCTTCGGAGAGGTTGAGGCGGAGAA 1 73 1 GAGAGGTTGAGGCGGAGAAGGCTGTTGAGGCTGTGATGAGGAGGA 1 99 1 CTGTGATGAGGAGGATCCTGGATGACGCGGAACGCCGTCTAAGGG 1 129 1 GTTCAGGAGGGGGGAGGTCGGCATAGACGCTCTAGTGGAGACATA 1 187 1 CATACACTCGGGTGAAAGCGCTGAGGGAGGCGGTGCGGGAAGAGC 1 228 1 TCAAGACTAGGAATCACGGGCTAGACGCGGATGGG 1 275 1 TCCCTGCCCTGGTGTTTATGTTCCTGGCGAGGCGCTACCTCGTGA 2 12 1 GCTACCTCGTGACCATGTGGGCTATGGCGGCGAGGTGA 2 45 1 CTATGTAACCGGGGGTTATGGGGGAGGAGCCTTCGTGCACCTAGC 3 162 1 TGGCTAACACGAGGACCTCGCCCGGGGCGGACCATATATTAGTAA 4 67 0 ** * ** ** ** * MAP Score: 21.961 Motif 3 GACATACACTCGGGTGAAAGCGCTGAGGGAGGCGGTGCGGGAA 1 226 1 GCCGGGGCCACAGGCTTCGGAGAGGTTGAGGCGGAGAAGGCTG 1 80 1 GACTATGTAACCGGGGGTTATGGGGGAGGAGCCTTCGTGCACC 3 160 1 GACGCGGAACGCCGTCTAAGGGAGGCTGAAGACAGGTTCAGGA 1 152 1 TGGCTGTATGCTGGCTAACACGAGGACCTCGCCCGGGGCGGAC 4 80 0 TTGCCACCATCAGGGGATTGCGTTGAACCAGCTTATAGTTACA 4 13 1 TATCAACCTCCTTGGTGGCGTGCTGCTGACGTTCGTCTACAGC 3 42 1 GGAGAAGGCTGTTGAGGCTGTGATGAGGAGGATCCTGGATGAC 1 112 1 CCAGTTTTCAGGGGTACGAGGGTTCTGCTAGGCTAGGCGTTCT 0 80 0 ACTCCCTGCCCTGGTGTTTATGTTCCTGGCGAGGCGCTACCTC 2 10 1 GATAACATTTGTGAACGTAGCGTTGAAGCAGAGGTACGCCTTC 3 249 1 TGTGGCCCCGGCTATCCTTGAGGGGCTGTAGACCCCCCGTAGC 1 49 0 GAGGATGGCGGACAGGGTGGCGGTGATCGAGGACGGC 1 4 1 GAGGCGCTACCTCGTGACCATGTGGGCTATGGCGGCGAGGTGA 2 40 1 GCTGAAGACAGGTTCAGGAGGGGGGAGGTCGGCATAGACGCTC 1 176 1 GCTATCAAGACTAGGAATCACGGGCTAGACGCGGATGGG 1 271 1 * ** * * ** * * * MAP Score: 21.2256 Motif 4 GAGGATGGCGGACAGGGTGGCGGTGATCGAGGACG 1 0 1 GGCGGTGATCGAGGACGGCAGGCTACGGGGGGTCTACAGCCCCTC 1 28 1 GGATAGCCGGGGCCACAGGCTTCGGAGAGGTTGAGGCGGAGAAGG 1 75 1 AGGTTGAGGCGGAGAAGGCTGTTGAGGCTGTGATGAGGAGGATCC 1 102 1 CCTGGATGACGCGGAACGCCGTCTAAGGGAGGCTGAAGACAGGTT 1 145 1 AAGGGAGGCTGAAGACAGGTTCAGGAGGGGGGAGGTCGGCATAGA 1 169 1 CATACACTCGGGTGAAAGCGCTGAGGGAGGCGGTGCGGGAAGAGC 1 228 1 TCAAGACTAGGAATCACGGGCTAGACGCGGATGGG 1 275 1 GCTACCTCGTGACCATGTGGGCTATGGCGGCGAGGTGA 2 45 1 GCCACTCATAGGTATCAACCTCCTTGGTGGCGTGCTGCTGACGTT 3 30 1 CTAGCATAACGATAGGCGGGCTAAACGAGGACTACTCGCCTATAA 3 101 1 CTACGACTATGTAACCGGGGGTTATGGGGGAGGAGCCTTCGTGCA 3 156 1 TAGTCGTCATACTAATGGCTATACAGGTGGCAGCGATAACATTTG 3 215 1 CGTTGAAGCAGAGGTACGCCTTCATAGGGGTGTGAAGAACC 3 269 1 TGCTGGCTAACACGAGGACCTCGCCCGGGGCGGACCATATATTAG 4 70 0 * *** ** ** * * MAP Score: 18.1854 Motif 5 CAGTTTTCAGGGGTACGAGGGTTCTGCTAGGCTAGG 0 86 0 AAATCCAAATGTCTGCCACGGCAAACCAGTTTTCAG 0 112 0 GAGGATGGCGGACAGGGTGGCGGTGATCGAGG 1 6 1 CGGTGATCGAGGACGGCAGGCTACGGGGGGTCTACA 1 30 1 AGCCCCTCAAGGATAGCCGGGGCCACAGGCTTCGGA 1 65 1 GCTTCGGAGAGGTTGAGGCGGAGAAGGCTGTTGAGG 1 93 1 GGAGGATCCTGGATGACGCGGAACGCCGTCTAAGGG 1 138 1 CTGAAGACAGGTTCAGGAGGGGGGAGGTCGGCATAG 1 177 1 CGCTGAGGGAGGCGGTGCGGGAAGAGCTATCAAGAC 1 246 1 TGACCATGTGGGCTATGGCGGCGAGGTGA 2 54 1 TGTAACCGGGGGTTATGGGGGAGGAGCCTTCGTGCA 3 165 1 CTAATATATGGTCCGCCCCGGGCGAGGTCCTCGTGT 4 70 1 ** ** * *** * * MAP Score: 17.0987 Motif 6 GGGTACGAGGGTTCTGCTAGGCTAGGCGTTCTTAACTT 0 74 0 TAAATCCAAATGTCTGCCACGGCAAACCAGTTTTCAGG 0 111 0 TATTTGACTCGCTTAGCTCCCTTAAAGCTAGCCTGCGA 0 195 1 CCGTCCTCGATCACCGCCACCCTGTCCGCCATCCTC 1 8 0 TTGAGGGGCTGTAGACCCCCCGTAGCCTGCCGTCCTCG 1 37 0 CTGTGATGAGGAGGATCCTGGATGACGCGGAACGCCGT 1 129 1 TGAACCTGTCTTCAGCCTCCCTTAGACGGCGTTCCGCG 1 154 0 AGAGCGTCTATGCCGACCTCCCCCCTCCTGAACCTGTC 1 182 0 AGCTCTTCCCGCACCGCCTCCCTCAGCGCTTTCACCCG 1 236 0 TCACCTCGCCGCCATAGCCCACATGGTCAC 2 53 0 CACTCATAGGTATCAACCTCCTTGGTGGCGTGCTGCTG 3 32 1 AGTAGTCCTCGTTTAGCCCGCCTATCGTTATGCTAGTA 3 99 0 GGCTAAACGAGGACTACTCGCCTATAACATACATTATC 3 119 1 GTGCACGAAGGCTCCTCCCCCATAACCCCCGGTTACAT 3 164 0 TTCGTGCACCTAGCAGCCTCCATAGTCGTCATACTAAT 3 193 1 TTGAAGCAGAGGTACGCCTTCATAGGGGTGTGAAGAAC 3 271 1 GACTTGCCACCATCAGGGGATTGCGTTG 4 0 1 AGGGGATTGCGTTGAACCAGCTTATAGTTACATGTAAG 4 24 1 ACCATATATTAGTAAGCCTGCTTACATGTAACTATAAG 4 44 0 ACTAATATATGGTCCGCCCCGGGCGAGGTCCTCGTGTT 4 69 1 GAGGTCCTCGTGTTAGCCAGCATACAGCCAAAGATATT 4 93 1 * *** ** ** ** MAP Score: 14.0345 Motif 7 CCCCTGAAAACTGGTTTGCCGTGGCAGACATTTGGATT 0 109 1 GAGGATGGCGGACAGGGTGGCGGTGATCGAGGACGG 1 8 1 GTGATCGAGGACGGCAGGCTACGGGGGGTCTACAGCCC 1 32 1 CCGGGGCCACAGGCTTCGGAGAGGTTGAGGCGGAGAAG 1 81 1 AAGGCTGTTGAGGCTGTGATGAGGAGGATCCTGGATGA 1 116 1 TGAGGAGGATCCTGGATGACGCGGAACGCCGTCTAAGG 1 135 1 ACGCGGAACGCCGTCTAAGGGAGGCTGAAGACAGGTTC 1 153 1 GCTGAAGACAGGTTCAGGAGGGGGGAGGTCGGCATAGA 1 176 1 CTCGGGTGAAAGCGCTGAGGGAGGCGGTGCGGGAAGAG 1 234 1 CTAGGAATCACGGGCTAGACGCGGATGGG 1 281 1 GTGACCATGTGGGCTATGGCGGCGAGGTGA 2 53 1 GTCAGCAGCACGCCACCAAGGAGGTTGATACCTATGAG 3 34 0 GTACTGACCTCGGTAACGCTGTAGACGAACGTCAGCAG 3 64 0 TAACGATAGGCGGGCTAAACGAGGACTACTCGCCTATA 3 107 1 ACTATGTAACCGGGGGTTATGGGGGAGGAGCCTTCGTG 3 161 1 GTGAACGTAGCGTTGAAGCAGAGGTACGCCTTCATAGG 3 259 1 ACACGAGGACCTCGCCCGGGGCGGACCATATATTAGTA 4 68 0 *** ** * ** ** MAP Score: 12.7645 Motif 8 TACCCCTGAAAACTGGTTTGCCGTGGCAGACATTTGGATTT 0 107 1 GAGGATGGCGGACAGGGTGGCGGTGATCGAGG 1 1 1 GCGGTGATCGAGGACGGCAGGCTACGGGGGGTCTACAGCCC 1 29 1 GGCCACAGGCTTCGGAGAGGTTGAGGCGGAGAAGGCTGTTG 1 85 1 TGAGGCTGTGATGAGGAGGATCCTGGATGACGCGGAACGCC 1 124 1 CTAAGGGAGGCTGAAGACAGGTTCAGGAGGGGGGAGGTCGG 1 167 1 TGTATGTCTCCACTAGAGCGTCTATGCCGACCTCCCCCCTC 1 193 0 TGGAGACATACACTCGGGTGAAAGCGCTGAGGGAGGCGGTG 1 222 1 GAAAGCGCTGAGGGAGGCGGTGCGGGAAGAGCTATCAAGAC 1 241 1 GACTAGGAATCACGGGCTAGACGCGGATGGG 1 279 1 CTACCTCGTGACCATGTGGGCTATGGCGGCGAGGTGA 2 46 1 AGACGAACGTCAGCAGCACGCCACCAAGGAGGTTGATACCT 3 39 0 TACGACTATGTAACCGGGGGTTATGGGGGAGGAGCCTTCGT 3 157 1 AGCGTTGAAGCAGAGGTACGCCTTCATAGGGGTGTGAAGAA 3 267 1 GCTTACTAATATATGGTCCGCCCCGGGCGAGGTCCTCGTGT 4 65 1 * * * * * ** *** MAP Score: 12.6735 Motif 9 AAACTGGTTTGCCGTGGCAGACATTTGGATTT 0 116 1 GAGGATGGCGGACAGGGTGGCGG 1 1 1 GATGGCGGACAGGGTGGCGGTGATCGAGGACG 1 13 1 CCCGGCTATCCTTGAGGGGCTGTAGACCCCCC 1 54 0 CTTCGGAGAGGTTGAGGCGGAGAAGGCTGTTG 1 94 1 GGAGAAGGCTGTTGAGGCTGTGATGAGGAGGA 1 112 1 GAGGATCCTGGATGACGCGGAACGCCGTCTAA 1 139 1 ACGCCGTCTAAGGGAGGCTGAAGACAGGTTCA 1 160 1 CTGAAGACAGGTTCAGGAGGGGGGAGGTCGGC 1 177 1 GGGTGAAAGCGCTGAGGGAGGCGGTGCGGGAA 1 237 1 TCACGGGCTAGACGCGGATGGG 1 288 1 TTATGTTCCTGGCGAGGCGCTACCTCGTGACC 2 27 1 GACCATGTGGGCTATGGCGGCGAGGTGA 2 55 1 TACTGACCTCGGTAACGCTGTAGACGAACGTC 3 69 0 GTAACCGGGGGTTATGGGGGAGGAGCCTTCGT 3 166 1 TATGACGACTATGGAGGCTGCTAGGTGCACGA 3 194 0 AATGGCTATACAGGTGGCAGCGATAACATTTG 3 228 1 TGAACGTAGCGTTGAAGCAGAGGTACGCCTTC 3 260 1 GAGGACCTCGCCCGGGGCGGACCATATATTAG 4 70 0 * ******** * MAP Score: 6.64708 Motif 10 GAGGATGGCGGACAGGGTGGCGGTGATCGA 1 3 1 CAGGGTGGCGGTGATCGAGGACGGCAGGCTACGGGGG 1 22 1 AGGCTTCGGAGAGGTTGAGGCGGAGAAGGCTGTTGAG 1 91 1 GGAGAAGGCTGTTGAGGCTGTGATGAGGAGGATCCTG 1 112 1 GAGGAGGATCCTGGATGACGCGGAACGCCGTCTAAGG 1 136 1 CTGAAGACAGGTTCAGGAGGGGGGAGGTCGGCATAGA 1 177 1 ACACTCGGGTGAAAGCGCTGAGGGAGGCGGTGCGGGA 1 231 1 TAGGAATCACGGGCTAGACGCGGATGGG 1 282 1 GACCATGTGGGCTATGGCGGCGAGGTGA 2 55 1 CTATGTAACCGGGGGTTATGGGGGAGGAGCCTTCGTG 3 162 1 TGAACGTAGCGTTGAAGCAGAGGTACGCCTTCATAGG 3 260 1 * ** ** * *** * MAP Score: 5.07269 Motif 11 GAGGATGGCGGACAGGGTGGCGGTGATCGAGGACGGCA 1 10 1 CGGGGCCACAGGCTTCGGAGAGGTTGAGGCGGAGAAGG 1 82 1 GGCGGAGAAGGCTGTTGAGGCTGTGATGAGGAGGATCC 1 109 1 CGCGGAACGCCGTCTAAGGGAGGCTGAAGACAGGTTCA 1 154 1 GCTGAAGACAGGTTCAGGAGGGGGGAGGTCGGCATAGA 1 176 1 TCGGGTGAAAGCGCTGAGGGAGGCGGTGCGGGAAGAGC 1 235 1 TAGGAATCACGGGCTAGACGCGGATGGG 1 282 1 TGGTGTTTATGTTCCTGGCGAGGCGCTACCTCGTGACC 2 21 1 TGACCATGTGGGCTATGGCGGCGAGGTGA 2 54 1 AGGTATCAACCTCCTTGGTGGCGTGCTGCTGACGTTCG 3 39 1 GTAACCGGGGGTTATGGGGGAGGAGCCTTCGTGCACCT 3 166 1 AGAGGTACGCCTTCATAGGGGTGTGAAGAACC 3 278 1 TATATGGTCCGCCCCGGGCGAGGTCCTCGTGTTAGCCA 4 74 1 * * ** * ** ** * MAP Score: 4.06697 Motif 12 TTCAGGGGTACGAGGGTTCTGCTAGGCTAGGCGTTC 0 81 0 AAATAATCTCTAGGGAGTTAGGTTTGGAGAGAAAAT 0 164 0 GAGGATGGCGGACAGGGTGGCGGTGATCGA 1 4 1 GACAGGGTGGCGGTGATCGAGGACGGCAGGCTACGG 1 20 1 TCTACAGCCCCTCAAGGATAGCCGGGGCCACAGGCT 1 60 1 TTAGACGGCGTTCCGCGTCATCCAGGATCCTCCTCA 1 135 0 GGAGGCTGAAGACAGGTTCAGGAGGGGGGAGGTCGG 1 172 1 CGGGTGAAAGCGCTGAGGGAGGCGGTGCGGGAAGAG 1 236 1 GGAACATAAACACCAGGGCAGGGAGT 2 0 0 ATGTTCCTGGCGAGGCGCTACCTCGTGACCATGTGG 2 29 1 CCTCGTGACCATGTGGGCTATGGCGGCGAGGTGA 2 49 1 CGAACGTCAGCAGCACGCCACCAAGGAGGTTGATAC 3 41 0 GACGTTCGTCTACAGCGTTACCGAGGTCAGTACTAG 3 69 1 TCAGTACTAGCATAACGATAGGCGGGCTAAACGAGG 3 95 1 GACTATGTAACCGGGGGTTATGGGGGAGGAGCCTTC 3 160 1 TATGGAGGCTGCTAGGTGCACGAAGGCTCCTCCCCC 3 181 0 ATATGGTCCGCCCCGGGCGAGGTCCTCGTGTTAGCC 4 75 1 AGATAATATCTTTGGCTGTATGCTGGCTAACACGAG 4 99 0 * *** **** ** MAP Score: 1.37624 Motif 13 CTCGTACCCCTGAAAACTGGTTTGCCGTGGCAGACATTTGGATT 0 103 1 GAGGATGGCGGACAGGGTGGCGGTGATCGAGGACGGCAGG 1 6 1 CGGTGATCGAGGACGGCAGGCTACGGGGGGTCTACAGCCCCTCA 1 30 1 GGGGTCTACAGCCCCTCAAGGATAGCCGGGGCCACAGGCTTCGG 1 56 1 ACAGGCTTCGGAGAGGTTGAGGCGGAGAAGGCTGTTGAGGCTGT 1 89 1 GAAGGCTGTTGAGGCTGTGATGAGGAGGATCCTGGATGACGCGG 1 115 1 TGGATGACGCGGAACGCCGTCTAAGGGAGGCTGAAGACAGGTTC 1 147 1 AGGCTGAAGACAGGTTCAGGAGGGGGGAGGTCGGCATAGACGCT 1 174 1 ACATACACTCGGGTGAAAGCGCTGAGGGAGGCGGTGCGGGAAGA 1 227 1 TCAAGACTAGGAATCACGGGCTAGACGCGGATGGG 1 275 1 CTGGCGAGGCGCTACCTCGTGACCATGTGGGCTATGGCGGCGAG 2 35 1 ATGCTAGTACTGACCTCGGTAACGCTGTAGACGAACGTCAGCAG 3 64 0 CTAGCATAACGATAGGCGGGCTAAACGAGGACTACTCGCCTATA 3 101 1 GCAGGCTTACTAATATATGGTCCGCCCCGGGCGAGGTCCTCGTG 4 61 1 * * * * * ** *** MAP Score: 0.914299