AlignACE 3.0 10/20/99
AlignACE2 -i AP/AP_fusions006_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248646
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	APE2213	168	163aa long hypothetical isoquinoline 1-oxidoreductase alpha subunit

Motif 1
GCCAGCATATGCACAGCCTCCCTCATATCA	0	52	1
TAGTCAAAACGCAAATCCACACTCTATAAA	0	90	1
ACTCTATAAAGCACATCCATATAGACATAA	0	110	1
TCCAAAAACTACACCTCCTCCACACGGGTT	0	147	0
GCATATGCTGGCACAGGATTTCGGTTTAAA	0	34	0
          **********
MAP Score: 6.45407

Motif 2
TCCTGTGCCAGCATATGCACAGCCTCCCTCA	0	46	1
TAGTCAAAACGCAAATCCACACTCTATAAAG	0	90	1
ACTCTATAAAGCACATCCATATAGACATAAT	0	110	1
AAAAACTACACCTCCTCCACACGGGTTTCTA	0	143	0
          *** *******
MAP Score: 5.84731

Motif 3
GGGGCGAACTATTATTTAAACCGAAATCCT	0	20	1
TTGCGTTTTGACTATTCAAACGTGATATGA	0	74	0
GCAAATCCACACTCTATAAAGCACATCCAT	0	100	1
          **********
MAP Score: 0.206491