AlignACE 3.0 10/20/99
AlignACE2 -i AP/AP_fusions008_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248655
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	APE2551	151	345aa long hypothetical anthranilate phosphoribosyltransferase
#1	APE2553	82	317aa long hypothetical anthranilate synthase component I
#2	APE2555	242	196aa long hypothetical anthranilate synthase component II

Motif 1
TCCAGGGGCTCGTTGAATTGGGAACTCGTCACTTTTAAGCTATAGCCTA	0	37	1
GAGCTTAAATACAGGTCGAGGCTGCTAGTTGTAGAATTGTGGTGAGAGA	0	103	1
 GTTCTTTCTGGTATCCTATGAGGCTGTTGTCGGTGAGGAGCCGTGGCT	1	9	1
TGTTGTCGGTGAGGAGCCGTGGCTATCGCGGCTGGTTGGTAGGCATGAG	1	34	1
CTCCTGCGTAGGGGCCCCTGGCCTCTTCCTCTAGTTCGGCTATAATTTC	2	11	0
CAGGAGCCATAGGAGTAGCGGGTTCTAGCGCGGGCGAGGCGGCCATAGT	2	54	1
ATAGTGCTGAGGAGCGCCTGGCTCCTAGATGACGGGGAGACCTTGGAAG	2	98	1
TAGATGACGGGGAGACCTTGGAAGCTAGAGCTGGCGCCGGGATAGTCTA	2	123	1
AGCCCGAGAGAGAGTACATGGAGACTGTCCAGAAACTCGGAAGCCTAAA	2	180	1
AAACTCGGAAGCCTAAAGAGGGCTCTGGGGGTGGATATGT         	2	212	1
          **    *  **   ** *     *    *
MAP Score: 19.0963

Motif 2
GAGCCCCTGGAGGAGGCTGGACCGGTGATGAAGAGCCA  	0	8	0
TTCTACAACTAGCAGCCTCGACCTGTATTTAAGCTCTTTC	0	99	0
 GTTCTTTCTGGTATCCTATGAGGCTGTTGTCGGTGAGGA	1	9	1
GTTGTCGGTGAGGAGCCGTGGCTATCGCGGCTGGTTGGTA	1	35	1
GCGGCTGGTTGGTAGGCATGAGTGGCCAGGT         	1	61	1
AACTAGAGGAAGAGGCCAGGGGCCCCTACGCAGGAGCCAT	2	24	1
GCCCCTACGCAGGAGCCATAGGAGTAGCGGGTTCTAGCGC	2	45	1
TCAGCACTATGGCCGCCTCGCCCGCGCTAGAACCCGCTAC	2	68	0
CCCGTCATCTAGGAGCCAGGCGCTCCTCAGCACTATGGCC	2	94	0
TAGATGACGGGGAGACCTTGGAAGCTAGAGCTGGCGCCGG	2	123	1
AAGCTAGAGCTGGCGCCGGGATAGTCTATGATAGCAAGCC	2	144	1
GTTTCTGGACAGTCTCCATGTACTCTCTCTCGGGCTTGCT	2	176	0
CCAGAAACTCGGAAGCCTAAAGAGGGCTCTGGGGGTGGAT	2	208	1
          ** ****  *   **    *
MAP Score: 16.7777

Motif 3
CATAGGAGTAGCGGGTTCTAGCGCGGGCGAGGCGGC	2	61	1
GAAGCCTAAAGAGGGCTCTGGGGGTGGATATGT   	2	219	1
CGAGCCCCTGGAGGAGGCTGGACCGGTGATGAAGAG	0	13	0
TAGCGCGGGCGAGGCGGCCATAGTGCTGAGGAGCGC	2	79	1
CGGGGAGACCTTGGAAGCTAGAGCTGGCGCCGGGAT	2	130	1
TCGGTGAGGAGCCGTGGCTATCGCGGCTGGTTGGTA	1	39	1
GGGCCCCTACGCAGGAGCCATAGGAGTAGCGGGTTC	2	43	1
CGAACTAGAGGAAGAGGCCAGGGGCCCCTACGCAGG	2	22	1
GGTATCCTATGAGGCTGTTGTCGGTGAGGAGCCGTG	1	19	1
AATACAGGTCGAGGCTGCTAGTTGTAGAATTGTGGT	0	110	1
ACTCTCTCTCGGGCTTGCTATCATAGACTATCCCGG	2	159	0
          * **  ***** *  *
MAP Score: 15.821

Motif 4
AGCCCCTGGAGGAGGCTGGACCGGTGATGAAGAGCCA  	0	8	0
TCTACAACTAGCAGCCTCGACCTGTATTTAAGCTCTTTC	0	99	0
GTTCTTTCTGGTATCCTATGAGGCTGTTGTCGGTGAGGA	1	10	1
TTGTCGGTGAGGAGCCGTGGCTATCGCGGCTGGTTGGTA	1	36	1
TCCTGCGTAGGGGCCCCTGGCCTCTTCCTCTAGTTCGGC	2	20	0
GCCCGCGCTAGAACCCGCTACTCCTATGGCTCCTGCGTA	2	50	0
GGGTTCTAGCGCGGGCGAGGCGGCCATAGTGCTGAGGAG	2	73	1
TAGTGCTGAGGAGCGCCTGGCTCCTAGATGACGGGGAGA	2	99	1
AGATGACGGGGAGACCTTGGAAGCTAGAGCTGGCGCCGG	2	124	1
AGACTGTCCAGAAACTCGGAAGCCTAAAGAGGGCTCTGG	2	201	1
          * * **  ***  **   *
MAP Score: 13.1509

Motif 5
ACGAGCCCCTGGAGGAGGCTGGACCGGTGATGAAGAGCCA     	0	5	0
TCACTTTTAAGCTATAGCCTATTGGAGATCGGTTGAAAGAGCTTA	0	65	1
AATACAGGTCGAGGCTGCTAGTTGTAGAATTGTGGTGAGAGAAAT	0	110	1
   GTTCTTTCTGGTATCCTATGAGGCTGTTGTCGGTGAGGAGCC	1	7	1
CGTGGCTATCGCGGCTGGTTGGTAGGCATGAGTGGCCAGGT    	1	51	1
CGAACTAGAGGAAGAGGCCAGGGGCCCCTACGCAGGAGCCATAGG	2	22	1
AGGAGCCATAGGAGTAGCGGGTTCTAGCGCGGGCGAGGCGGCCAT	2	55	1
GCGAGGCGGCCATAGTGCTGAGGAGCGCCTGGCTCCTAGATGACG	2	87	1
CGCCTGGCTCCTAGATGACGGGGAGACCTTGGAAGCTAGAGCTGG	2	112	1
GGAAGCTAGAGCTGGCGCCGGGATAGTCTATGATAGCAAGCCCGA	2	142	1
TGGAGACTGTCCAGAAACTCGGAAGCCTAAAGAGGGCTCTGGGGG	2	198	1
          *  *  *** **    *    *  *
MAP Score: 10.2243

Motif 6
CCAATTCAACGAGCCCCTGGAGGAGGCTGGACCGGTGATG	0	18	0
AAGAGCTTAAATACAGGTCGAGGCTGCTAGTTGTAGAATT	0	101	1
CTCACCGACAACAGCCTCATAGGATACCAGAAAGAAC   	1	7	0
TCGGTGAGGAGCCGTGGCTATCGCGGCTGGTTGGTAGGCA	1	39	1
AATTATAGCCGAACTAGAGGAAGAGGCCAGGGGCCCCTAC	2	13	1
AGAGGCCAGGGGCCCCTACGCAGGAGCCATAGGAGTAGCG	2	34	1
TCAGCACTATGGCCGCCTCGCCCGCGCTAGAACCCGCTAC	2	68	0
CCATAGTGCTGAGGAGCGCCTGGCTCCTAGATGACGGGGA	2	96	1
CCTAGATGACGGGGAGACCTTGGAAGCTAGAGCTGGCGCC	2	121	1
GCTTGCTATCATAGACTATCCCGGCGCCAGCTCTAGCTTC	2	143	0
CAAGCCCGAGAGAGAGTACATGGAGACTGTCCAGAAACTC	2	178	1
CACCCCCAGAGCCCTCTTTAGGCTTCCGAGTTTCTGGACA	2	205	0
          *  * *     **  *****
MAP Score: 10.0334

Motif 7
GAGGAGGCTGGACCGGTGATGAAGAGCCA       	0	3	0
AATTCAACGAGCCCCTGGAGGAGGCTGGACCGGTGA	0	20	0
AAAGAGCTTAAATACAGGTCGAGGCTGCTAGTTGTA	0	100	1
TATCCTATGAGGCTGTTGTCGGTGAGGAGCCGTGGC	1	21	1
GGTGAGGAGCCGTGGCTATCGCGGCTGGTTGGTAGG	1	41	1
TATCGCGGCTGGTTGGTAGGCATGAGTGGCCAGGT 	1	57	1
AAATTATAGCCGAACTAGAGGAAGAGGCCAGGGGCC	2	12	1
AGAGGCCAGGGGCCCCTACGCAGGAGCCATAGGAGT	2	34	1
AGCCATAGGAGTAGCGGGTTCTAGCGCGGGCGAGGC	2	58	1
GGCGAGGCGGCCATAGTGCTGAGGAGCGCCTGGCTC	2	86	1
GCGCCTGGCTCCTAGATGACGGGGAGACCTTGGAAG	2	111	1
GGAGACCTTGGAAGCTAGAGCTGGCGCCGGGATAGT	2	133	1
TCCATGTACTCTCTCTCGGGCTTGCTATCATAGACT	2	166	0
GCCTAAAGAGGGCTCTGGGGGTGGATATGT      	2	222	1
          * * *  * ** ****
MAP Score: 7.26324

Motif 8
GCCCCTGGAGGAGGCTGGACCGGTGATGAAGAGCCA       	0	3	0
GCCTCCTCCAGGGGCTCGTTGAATTGGGAACTCGTCACTTTTA	0	31	1
TCGTCACTTTTAAGCTATAGCCTATTGGAGATCGGTTGAAAGA	0	62	1
GGTTGAAAGAGCTTAAATACAGGTCGAGGCTGCTAGTTGTAGA	0	95	1
GCTGCTAGTTGTAGAATTGTGGTGAGAGAAATGAGCCA     	0	123	1
GGTATCCTATGAGGCTGTTGTCGGTGAGGAGCCGTGGCTATCG	1	19	1
GAGGAGCCGTGGCTATCGCGGCTGGTTGGTAGGCATGAGTGGC	1	44	1
GGAAATTATAGCCGAACTAGAGGAAGAGGCCAGGGGCCCCTAC	2	10	1
CAGGGGCCCCTACGCAGGAGCCATAGGAGTAGCGGGTTCTAGC	2	40	1
AGGAGTAGCGGGTTCTAGCGCGGGCGAGGCGGCCATAGTGCTG	2	64	1
CCGTCATCTAGGAGCCAGGCGCTCCTCAGCACTATGGCCGCCT	2	90	0
CTGGCTCCTAGATGACGGGGAGACCTTGGAAGCTAGAGCTGGC	2	115	1
ATAGTCTATGATAGCAAGCCCGAGAGAGAGTACATGGAGACTG	2	164	1
AAACTCGGAAGCCTAAAGAGGGCTCTGGGGGTGGATATGT   	2	212	1
          *  **  * * *   * **   *
MAP Score: 6.11285

Motif 9
GGCTGTTGTCGGTGAGGAGCCGTGGCTATCG	1	31	1
TAGAGGAAGAGGCCAGGGGCCCCTACGCAGG	2	27	1
AGGAGCCATAGGAGTAGCGGGTTCTAGCGCG	2	55	1
TTCTAGCGCGGGCGAGGCGGCCATAGTGCTG	2	76	1
TTGGAAGCTAGAGCTGGCGCCGGGATAGTCT	2	140	1
CCTAAAGAGGGCTCTGGGGGTGGATATGT  	2	223	1
          ** ********
MAP Score: 3.40292

Motif 10
CCAATTCAACGAGCCCCTGGAGGAGGCTGGACCGGTGATG	0	18	0
TTTAAGCTATAGCCTATTGGAGATCGGTTGAAAGAGCTTA	0	70	1
GCTTAAATACAGGTCGAGGCTGCTAGTTGTAGAATTGTGG	0	105	1
CTGGTATCCTATGAGGCTGTTGTCGGTGAGGAGCCGTGGC	1	17	1
TGAGGAGCCGTGGCTATCGCGGCTGGTTGGTAGGCATGAG	1	43	1
ATTATAGCCGAACTAGAGGAAGAGGCCAGGGGCCCCTACG	2	14	1
CCCTACGCAGGAGCCATAGGAGTAGCGGGTTCTAGCGCGG	2	47	1
AGCGCGGGCGAGGCGGCCATAGTGCTGAGGAGCGCCTGGC	2	80	1
AGGAGCGCCTGGCTCCTAGATGACGGGGAGACCTTGGAAG	2	107	1
GAGACCTTGGAAGCTAGAGCTGGCGCCGGGATAGTCTATG	2	134	1
GAAACTCGGAAGCCTAAAGAGGGCTCTGGGGGTGGATATG	2	211	1
          ****    *  *  **  **
MAP Score: 2.51398

Motif 11
TGTCGGTGAGGAGCCGTGGCTATCGCGGCTGGTTG	1	37	1
AAGAGGCCAGGGGCCCCTACGCAGGAGCCATAGGA	2	33	1
TAGGAGTAGCGGGTTCTAGCGCGGGCGAGGCGGCC	2	63	1
GAGGCGGCCATAGTGCTGAGGAGCGCCTGGCTCCT	2	89	1
CCTTGGAAGCTAGAGCTGGCGCCGGGATAGTCTAT	2	138	1
AGCCTAAAGAGGGCTCTGGGGGTGGATATGT    	2	221	1
          * *  ******  **
MAP Score: 1.47129