AlignACE 3.0 10/20/99
AlignACE2 -i AP/AP_fusions008_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248666
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	APE2551	151	345aa long hypothetical anthranilate phosphoribosyltransferase
#1	APE2553	82	317aa long hypothetical anthranilate synthase component I
#2	APE2555	242	196aa long hypothetical anthranilate synthase component II

Motif 1
AGGGGCCCCTACGCAGGAGCCATAGGAGTAG	2	41	1
TTGGAAGCTAGAGCTGGCGCCGGGATAGTCT	2	140	1
GGCTGTTGTCGGTGAGGAGCCGTGGCTATCG	1	31	1
CTGGACCGGTGATGAAGAGCCA         	0	1	0
AGCCGAACTAGAGGAAGAGGCCAGGGGCCCC	2	19	1
 ACATATCCACCCCCAGAGCCCTCTTTAGGC	2	222	0
GGGTTCTAGCGCGGGCGAGGCGGCCATAGTG	2	73	1
TACCAACCAGCCGCGATAGCCACGGCTCCTC	1	44	0
CGGCCATAGTGCTGAGGAGCGCCTGGCTCCT	2	93	1
CAACGAGCCCCTGGAGGAGGCTGGACCGGTG	0	21	0
AGCTTAAATACAGGTCGAGGCTGCTAGTTGT	0	104	1
GCTCCTAGATGACGGGGAGACCTTGGAAGCT	2	118	1
CGTCACTTTTAAGCTATAGCCTATTGGAGAT	0	63	1
CTGTCCAGAAACTCGGAAGCCTAAAGAGGGC	2	204	1
GGTTGGTAGGCATGAGTGGCCAGGT      	1	67	1
ATGATAGCAAGCCCGAGAGAGAGTACATGGA	2	171	1
          **** ******
MAP Score: 19.0561

Motif 2
CGAGCCCCTGGAGGAGGCTGGACCGGTGATGAAGAGCCA       	0	3	0
GCCTCCTCCAGGGGCTCGTTGAATTGGGAACTCGTCACTTTTAAGC	0	31	1
GGTATCCTATGAGGCTGTTGTCGGTGAGGAGCCGTGGCTATCGCGG	1	19	1
CGTGGCTATCGCGGCTGGTTGGTAGGCATGAGTGGCCAGGT     	1	51	1
GGAAATTATAGCCGAACTAGAGGAAGAGGCCAGGGGCCCCTACGCA	2	10	1
CAGGGGCCCCTACGCAGGAGCCATAGGAGTAGCGGGTTCTAGCGCG	2	40	1
TTCTAGCGCGGGCGAGGCGGCCATAGTGCTGAGGAGCGCCTGGCTC	2	76	1
TAGATGACGGGGAGACCTTGGAAGCTAGAGCTGGCGCCGGGATAGT	2	123	1
GTCCAGAAACTCGGAAGCCTAAAGAGGGCTCTGGGGGTGGATATGT	2	206	1
          * *** *  *     * *     * *
MAP Score: 14.1184

Motif 3
AATTCAACGAGCCCCTGGAGGAGGCTGGACCGGTGATGA	0	17	0
GGTTGAAAGAGCTTAAATACAGGTCGAGGCTGCTAGTTG	0	95	1
ATGAGGCTGTTGTCGGTGAGGAGCCGTGGCTATCGCGGC	1	27	1
GGAAATTATAGCCGAACTAGAGGAAGAGGCCAGGGGCCC	2	10	1
CCCCTACGCAGGAGCCATAGGAGTAGCGGGTTCTAGCGC	2	46	1
AGGAGTAGCGGGTTCTAGCGCGGGCGAGGCGGCCATAGT	2	64	1
GAGGAGCGCCTGGCTCCTAGATGACGGGGAGACCTTGGA	2	106	1
GGAGACCTTGGAAGCTAGAGCTGGCGCCGGGATAGTCTA	2	133	1
AAACTCGGAAGCCTAAAGAGGGCTCTGGGGGTGGATATG	2	212	1
          **     ***  * ** **
MAP Score: 12.6767

Motif 4
CGAGCCCCTGGAGGAGGCTGGACCGGTGATGAA	0	16	0
ATTCTACAACTAGCAGCCTCGACCTGTATTTAA	0	107	0
TGTTGTCGGTGAGGAGCCGTGGCTATCGCGGCT	1	34	1
CGCGGCTGGTTGGTAGGCATGAGTGGCCAGGT 	1	60	1
CGAACTAGAGGAAGAGGCCAGGGGCCCCTACGC	2	22	1
GGCCCCTACGCAGGAGCCATAGGAGTAGCGGGT	2	44	1
GCGGGTTCTAGCGCGGGCGAGGCGGCCATAGTG	2	71	1
CCCCGTCATCTAGGAGCCAGGCGCTCCTCAGCA	2	102	0
CCTAGATGACGGGGAGACCTTGGAAGCTAGAGC	2	121	1
TTGGAAGCTAGAGCTGGCGCCGGGATAGTCTAT	2	140	1
TAGTCTATGATAGCAAGCCCGAGAGAGAGTACA	2	165	1
GAAGCCTAAAGAGGGCTCTGGGGGTGGATATGT	2	219	1
          ****** *  ***
MAP Score: 12.5159

Motif 5
AGGCTGGACCGGTGATGAAGAGCCA         	0	1	0
ATTCAACGAGCCCCTGGAGGAGGCTGGACCGGTG	0	21	0
AGCTTAAATACAGGTCGAGGCTGCTAGTTGTAGA	0	104	1
TGAGGCTGTTGTCGGTGAGGAGCCGTGGCTATCG	1	28	1
TATAGCCGAACTAGAGGAAGAGGCCAGGGGCCCC	2	16	1
GGGTTCTAGCGCGGGCGAGGCGGCCATAGTGCTG	2	73	1
CTGGCTCCTAGATGACGGGGAGACCTTGGAAGCT	2	115	1
ACCTTGGAAGCTAGAGCTGGCGCCGGGATAGTCT	2	137	1
AAAGAGGGCTCTGGGGGTGGATATGT        	2	226	1
          *  * ** ******
MAP Score: 12.4156

Motif 6
CAACGAGCCCCTGGAGGAGGCTGGACCGGTGA	0	20	0
AGCTTAAATACAGGTCGAGGCTGCTAGTTGTA	0	104	1
TGAGGCTGTTGTCGGTGAGGAGCCGTGGCTAT	1	28	1
AGCCGAACTAGAGGAAGAGGCCAGGGGCCCCT	2	19	1
GGGTTCTAGCGCGGGCGAGGCGGCCATAGTGC	2	73	1
GCTCCTAGATGACGGGGAGACCTTGGAAGCTA	2	118	1
AAAGAGGGCTCTGGGGGTGGATATGT      	2	226	1
          * *** ******
MAP Score: 9.94618

Motif 7
ATAGCCTATTGGAGATCGGTTGAAAGAGCTTAAATACAGGTCGAGGC	0	78	1
GCTGCTAGTTGTAGAATTGTGGTGAGAGAAATGAGCCA         	0	123	1
    GTTCTTTCTGGTATCCTATGAGGCTGTTGTCGGTGAGGAGCCG	1	6	1
CCGTGGCTATCGCGGCTGGTTGGTAGGCATGAGTGGCCAGGT     	1	50	1
GGAAATTATAGCCGAACTAGAGGAAGAGGCCAGGGGCCCCTACGCAG	2	10	1
CCCCTACGCAGGAGCCATAGGAGTAGCGGGTTCTAGCGCGGGCGAGG	2	46	1
TTCTAGCGCGGGCGAGGCGGCCATAGTGCTGAGGAGCGCCTGGCTCC	2	76	1
GCGCCTGGCTCCTAGATGACGGGGAGACCTTGGAAGCTAGAGCTGGC	2	111	1
GGAAGCTAGAGCTGGCGCCGGGATAGTCTATGATAGCAAGCCCGAGA	2	142	1
ATGGAGACTGTCCAGAAACTCGGAAGCCTAAAGAGGGCTCTGGGGGT	2	197	1
          ** *       *  ** *    *  **
MAP Score: 6.14914

Motif 8
TCCCAATTCAACGAGCCCCTGGAGGAGGCTGGACC	0	25	0
CTTAAATACAGGTCGAGGCTGCTAGTTGTAGAATT	0	106	1
 GTTCTTTCTGGTATCCTATGAGGCTGTTGTCGGT	1	9	1
GTTGTCGGTGAGGAGCCGTGGCTATCGCGGCTGGT	1	35	1
CCGAACTAGAGGAAGAGGCCAGGGGCCCCTACGCA	2	21	1
GCCCCTACGCAGGAGCCATAGGAGTAGCGGGTTCT	2	45	1
GCGGGTTCTAGCGCGGGCGAGGCGGCCATAGTGCT	2	71	1
CATAGTGCTGAGGAGCGCCTGGCTCCTAGATGACG	2	97	1
CTAGATGACGGGGAGACCTTGGAAGCTAGAGCTGG	2	122	1
GTCTATGATAGCAAGCCCGAGAGAGAGTACATGGA	2	167	1
CCAGAAACTCGGAAGCCTAAAGAGGGCTCTGGGGG	2	208	1
          ** ****   ** **
MAP Score: 4.14692

Motif 9
CAATTCAACGAGCCCCTGGAGGAGGCTGGACCGGTGATGAAGAG	0	13	0
 GTTCTTTCTGGTATCCTATGAGGCTGTTGTCGGTGAGGAGCCG	1	9	1
GTTGTCGGTGAGGAGCCGTGGCTATCGCGGCTGGTTGGTAGGCA	1	35	1
 GGAAATTATAGCCGAACTAGAGGAAGAGGCCAGGGGCCCCTAC	2	9	1
AAGAGGCCAGGGGCCCCTACGCAGGAGCCATAGGAGTAGCGGGT	2	33	1
GTTCTAGCGCGGGCGAGGCGGCCATAGTGCTGAGGAGCGCCTGG	2	75	1
GGGAGACCTTGGAAGCTAGAGCTGGCGCCGGGATAGTCTATGAT	2	132	1
GTCTATGATAGCAAGCCCGAGAGAGAGTACATGGAGACTGTCCA	2	167	1
CCAGAAACTCGGAAGCCTAAAGAGGGCTCTGGGGGTGGATATGT	2	208	1
          ** ***    *  *  *     **
MAP Score: 4.01024

Motif 10
GCTCTTCATCACCGGTCCAGCCTCCTCCAGGGGCTCGTTGAATTGG	0	12	1
AGCCGCGATAGCCACGGCTCCTCACCGACAACAGCCTCATAGGATA	1	21	0
     ACCTGGCCACTCATGCCTACCAACCAGCCGCGATAGCCACG	1	51	0
CTGCGTAGGGGCCCCTGGCCTCTTCCTCTAGTTCGGCTATAATTTC	2	11	0
CCGCGCTAGAACCCGCTACTCCTATGGCTCCTGCGTAGGGGCCCCT	2	41	0
CAGCACTATGGCCGCCTCGCCCGCGCTAGAACCCGCTACTCCTATG	2	61	0
TCATCTAGGAGCCAGGCGCTCCTCAGCACTATGGCCGCCTCGCCCG	2	84	0
GCTCCTAGATGACGGGGAGACCTTGGAAGCTAGAGCTGGCGCCGGG	2	118	1
 ACATATCCACCCCCAGAGCCCTCTTTAGGCTTCCGAGTTTCTGGA	2	207	0
          *** *     ***    *     * *
MAP Score: 3.32921