AlignACE 3.0 10/20/99
AlignACE2 -i AP/AP_fusions009_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248677
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	APE0675	143	117aa long hypothetical methionyl-tRNA synthetase
#1	APE1592	40	475aa long hypothetical cysteinyl-tRNA synthetase

Motif 1
TGTTCAGTGTCGCCTGGGGTCGTCACCCCGGGA	0	74	1
CCCAGGCTCCCTTCCGGGGGTGTTCAGTGTCGC	0	54	1
CCCGGAAGGGAGCCTGGGGGTGTTGTGAGGAGT	0	39	0
 CCGCCTGAAACCCCGGGGTAGATGGGGTGGAG	1	18	0
CTGGGGTCGTCACCCCGGGAATTAGATTCTTTA	0	87	1
GCTGAAATATCCCTCCGGGAGGATAAAGAATCT	0	110	0
CTTGTCCGACCCTTTAGGGGGGTT         	0	1	0
CCGGAGGGATATTTCAGCGTGGTGAAGC     	0	125	1
          * *******  **
MAP Score: 18.9389

Motif 2
CAGCCTTGTCCGACCCTTTAGGGGGGTT        	0	2	0
GCTGAACTCCTCACAACACCCCCAGGCTCCCTTCCG	0	34	1
TTCCGGGGGTGTTCAGTGTCGCCTGGGGTCGTCACC	0	65	1
TGTCGCCTGGGGTCGTCACCCCGGGAATTAGATTCT	0	81	1
GGGAATTAGATTCTTTATCCTCCCGGAGGGATATTT	0	103	1
CCTCCCGGAGGGATATTTCAGCGTGGTGAAGC    	0	121	1
GGGGTAGATGGGGTGGAGCCTGGGGC          	1	0	0
        CCGCCTGAAACCCCGGGGTAGATGGGGT	1	22	0
          ** *    ***** **
MAP Score: 2.21825