AlignACE 3.0 10/20/99
AlignACE2 -i AP/AP_fusions009_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248679
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	APE0675	143	117aa long hypothetical methionyl-tRNA synthetase
#1	APE0676	21	274aa long hypothetical 3-methyl-2-oxobutanoate hydroxymethyl transferase
#2	APE1592	40	475aa long hypothetical cysteinyl-tRNA synthetase

Motif 1
      AACCCCCCTAAAGGGTCGGACAAG	0	4	1
CCCGGAAGGGAGCCTGGGGGTGTTGTGAGG	0	42	0
ACACTGAACACCCCCGGAAGGGAGCCTGGG	0	54	0
TGTTCAGTGTCGCCTGGGGTCGTCACCCCG	0	74	1
TGGGGTCGTCACCCCGGGAATTAGATTCTT	0	88	1
CTGAAATATCCCTCCGGGAGGATAAAGAAT	0	112	0
CACCCCATCTACCCCGGGGTTTCAGGCGG 	2	21	1
          **********
MAP Score: 15.2679