AlignACE 3.0 10/20/99 AlignACE2 -i AP/AP_operons008_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944249327 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 APE0233 36 340aa long hypothetical protein #1 APE0234 63 278aa long hypothetical acetoin utilization acub protein #2 APE0235 154 311aa long hypothetical protein #3 APE0267 300 143aa long hypothetical protein #4 APE0383 141 147aa long hypothetical protein #5 APE0785 246 617aa long hypothetical protein #6 APE0974 300 331aa long hypothetical protein #7 APE1567 119 369aa long hypothetical protein Motif 1 GCGAGCGCAGAGCCCCAGGGGCGGTGAAGAAGGATTATAACA 2 47 1 GCTGGCCACAAGCCCCCTCGTGGGCTCGGGATTTGTGAT 3 7 0 GGGGGCTTGTGGCCAGCACTAGAGGGCTATCGTAACGGCCCA 3 32 1 CTATCGTAACGGCCCAGAAGGTTGTACAATAGAGCCACGCCA 3 58 1 CCAAGAGCACGGCCTCCAGGGAAGTATTCGAGGGCTTCGGGA 3 97 1 TTGTCTAATTGTCCTGGAGGGTATAACTGTCGTGTGGCTCTG 3 180 0 AGTGTAAGGGCCCGCCAGCTCGATAAGGGGTGTAGATGCT 4 8 1 CACCGCGTTTAATCTGGATGTGAGGTGCGGAGGGTTTGGGCC 4 83 1 GGAGGGTTTGGGCCTGGAAGAGGGCTATGACGACGTCCTT 4 111 1 ATCATTACACGGCCGGGGGGAACGATGCCATGTTTCCACGAG 5 57 1 TTTAAATTGTGACCTAGGTGGACGGCTGGAATTCAACTTTTA 5 114 1 TTTGATTTTAGGTCTACTGGGGTGTTGGGTTGAAGGCCTGGG 5 188 1 TTGGGTTGAAGGCCTGGGAGATTGCTAGGAAGCCAAGGGTTG 5 212 1 GATAGAGGAGGACCTGCTGGAGCTGCTGGAGGAGTATGCTAG 6 98 1 AAAATGTAGTGTCCTGCTAGAAATGTTTGAACTGAGACCCTC 6 251 1 CTCCTGCTTTGGCCAGCGCGGCTGAGGTCCTCGCCAGTGCCC 7 73 1 **** ** * * * * MAP Score: 29.0435 Motif 2 ATCATTACACGGCCGGGGGGAACGATGCCA 5 57 1 CCTCGCCAGTGCCCTGAGGGCCGTTGGT 7 101 1 CTCGAATACTTCCCTGGAGGCCGTGCTCTT 3 99 0 AATAAGAAGAGCCCTGGAGAAGTATCTAAG 6 167 1 TTGGGTTGAAGGCCTGGGAGATTGCTAGGA 5 212 1 AAGCCAATATACCCTGGGGGGTATTGGATC 3 221 1 CAAATCCCGAGCCCACGAGGGGGCTTGTGG 3 14 1 TTGTCTAATTGTCCTGGAGGGTATAACTGT 3 192 0 GGAGGGTTTGGGCCTGGAAGAGGGCTATGA 4 111 1 CGAGCGCAGAGCCCCAGGGGCGGTGAAGAA 2 48 1 TATCGTAACGGCCCAGAAGGTTGTACAATA 3 59 1 TGTGTATAGGGGCTTGGGTGT 2 143 1 GAAATCCCGGGGGACAATCTTTTT 6 4 1 AGTATTCGAGGGCTTCGGGATCAAGATCAA 3 119 1 TGGAGGAGTATGCTAGGAGGAAGAACTTGA 6 124 1 GATGCCATGTTTCCACGAGGAACCTAAATC 5 80 1 TGTGTATCCAAGACTGGGGGTATGAG 7 6 0 CCTGGGAGATTGCTAGGAAGCCAAGGGTTG 5 224 1 CTTGTGGCCAGCACTAGAGGGCTATCGTAA 3 37 1 TAAACGCGGTGTCTAAGGGGCTAATATAGC 4 64 0 ********** MAP Score: 27.0522 Motif 3 ACCAACGGCCCTCAGGGCACT 7 108 0 TGATCTTGATCCCGAAGCCCTCGAATACTT 3 118 0 GGCCTTCAACCCAACACCCCAGTAGACCTA 5 196 0 CTAGTGCTGGCCACAAGCCCCCTCGTGGGC 3 24 0 GGGCTCTGCGCTCGCACCCCTCACCATCCC 2 32 0 TCCTAGCAATCTCCCAGGCCTTCAACCCAA 5 212 0 ATCACAAATCCCGAGCCCACGAGGGGGC 3 8 1 TAGAGCCACGCCAAGAGCACGGCCTCCAGG 3 87 1 ACACCCAAGCCCCTATACACATA 2 141 0 CGAATACTTCCCTGGAGGCCGTGCTCTTGG 3 97 0 TTTAGTAGATCCAATACCCCCCAGGGTATA 3 228 0 GGCATCGTTCCCCCCGGCCGTGTAATGATA 5 56 0 GAGGGCTATCGTAACGGCCCAGAAGGTTGT 3 53 1 GCATACTCCTCCAGCAGCTCCAGCAGGTCC 6 107 0 GGGGTGCGAGCGCAGAGCCCCAGGGGCGGT 2 42 1 AGTGTAAGGGCCCGCCAGCTCGA 4 3 1 GAAATCCCGGGGGACAATCTTTTTC 6 5 1 CTCATACCCCCAGTCTTGGA 7 0 1 GCTGGCCAAAGCAGGAGCACCCGGTGATAA 7 60 0 TAATCCTTCTTCACCGCCCCTGGGGCTCTG 2 54 0 TCATAGCCCTCTTCCAGGCCCAAACCCTCC 4 111 0 AAGGACGTCGTCATAGCCCTCTTCCAGGC 4 122 0 GCCTTAAGCATCTACACCCCTTATCGAGCT 4 26 0 TGAGGTCCTCGCCAGTGCCCTGAGGGCCGT 7 95 1 ACAGTTATACCCTCCAGGACAATTAGACAA 3 192 1 TCAAACATTTCTAGCAGGACACTACATTTT 6 251 0 TTCAGGTTAACCAGAGCCACACGACAGTTA 3 169 1 CGCGCAAAGCCTTCAACCCCTAAACTCTAC 6 55 0 GATAAGTCTTGTAGTAGGCCGGGCAAAACT 7 35 0 TAGATACTTCTCCAGGGCTCTTCTTATTAT 6 165 0 GCCCAAACCCTCCGCACCTCACATCCAGAT 4 94 0 ********** MAP Score: 26.2391 Motif 4 TTTAGTAGATCCAATACCCCCCAGGGTATAT 3 227 0 CTCTTCCAGGCCCAAACCCTCCGCACCTCAC 4 102 0 ACACCCAAGCCCCTATACACATAG 2 140 0 CTCATACCCCCAGTCTTGGAT 7 0 1 GGGGTGCGAGCGCAGAGCCCCAGGGGCGGTG 2 42 1 GATCTTGATCCCGAAGCCCTCGAATACTTCC 3 116 0 CTAGCAATCTCCCAGGCCTTCAACCCAACAC 5 209 0 ACCAACGGCCCTCAGGGCACTG 7 107 0 ATCACAAATCCCGAGCCCACGAGGGGGCTT 3 9 1 CGCACCCCTCACCATCCCCTCTCCTATATGT 2 19 0 CCATCCATCACCTCCAACAAGGAAA 0 21 0 GGCCTTCAACCCAACACCCCAGTAGACCTAA 5 195 0 TGGGCCGTTACGATAGCCCTCTAGTGCTGGC 3 43 0 GCATACTCCTCCAGCAGCTCCAGCAGGTCCT 6 106 0 CCACGCCAAGAGCACGGCCTCCAGGGAAGTA 3 92 1 TAGTGCTGGCCACAAGCCCCCTCGTGGGCTC 3 22 0 AATGTTTGAACTGAGACCCTCTTTTAATATG 6 272 1 TACAACCCTTGGCTTCCTAGCAATCT 5 230 0 GCTGACGACGCGCAAAGCCTTCAACCCCTAA 6 62 0 GGGCTCTGCGCTCGCACCCCTCACCATCCCC 2 31 0 ATTCAGGTTAACCAGAGCCACACGACAGTTA 3 168 1 CGAGATAATAAGAAGAGCCCTGGAGAAGTAT 6 161 1 **** ****** MAP Score: 26.0486 Motif 5 ATATAGGAGAGGGGATGGTGAGGGGTGCGAGCGCAGAGCCCC 2 21 1 CCCCAGGGGCGGTGAAGAAGGATTATAACAGCGTCTGACCCT 2 59 1 GCCCACGAGGGGGCTTGTGGCCAGCACTAGAGGGCTATCGTA 3 24 1 CTATCGTAACGGCCCAGAAGGTTGTACAATAGAGCCACGCCA 3 58 1 ATACTTCCCTGGAGGCCGTGCTCTTGGCGTGGCTCTATTGTA 3 82 0 TTGTCTAATTGTCCTGGAGGGTATAACTGTCGTGTGGCTCTG 3 180 0 ATAAAACCCTTGATTGGAAGCGGGAGAACAGGC 3 277 1 AGTGTAAGGGCCCGCCAGCTCGATAAGGGGTGTAGATGCT 4 8 1 CTGGATGTGAGGTGCGGAGGGTTTGGGCCTGGAAGAGGGCTA 4 96 1 ATCATTACACGGCCGGGGGGAACGATGCCATGTTTCCACGAG 5 57 1 TTGTTTAAATTGTGACCTAGGTGGACGGCTGGAATTCAACTT 5 111 1 TTTGATTTTAGGTCTACTGGGGTGTTGGGTTGAAGGCCTGGG 5 188 1 TTGGGTTGAAGGCCTGGGAGATTGCTAGGAAGCCAAGGGTTG 5 212 1 GTAGAGTTTAGGGGTTGAAGGCTTTGCGCGTCGTCAGCTTCA 6 55 1 TCAAGATAGAGGAGGACCTGCTGGAGCTGCTGGAGGAGTATG 6 94 1 GGGAGAAGCCGGATATGAAGCCATATGTCGGCAAGGTAATGA 6 196 1 CTTATCACCGGGTGCTCCTGCTTTGGCCAGCGCGGCTGAGGT 7 59 1 ACCAACGGCCCTCAGGGCACTGGCGAGGACCTCAGCCG 7 91 0 ** * * ** * * * * MAP Score: 21.1714 Motif 6 TCCTTCTTCACCGCCCCTGGGGCTCTGCGCTCGCAC 2 45 0 TAATCCTCCTATGTGTATAGGGGCTTGGGTGT 2 132 1 TGGCCACAAGCCCCCTCGTGGGCTCGGGATTTGTGA 3 11 0 GCTTGTGGCCAGCACTAGAGGGCTATCGTAACGGCC 3 36 1 GCTATCGTAACGGCCCAGAAGGTTGTACAATAGAGC 3 57 1 CCCTCGAATACTTCCCTGGAGGCCGTGCTCTTGGCG 3 95 0 CAAAGCCAATATACCCTGGGGGGTATTGGATCTACT 3 219 1 CACCCCTTATCGAGCTGGCGGGCCCTTACACT 4 6 0 TCTGGATGTGAGGTGCGGAGGGTTTGGGCCTGGAAG 4 95 1 AGGGTTTGGGCCTGGAAGAGGGCTATGACGACGTCC 4 113 1 AACATGGCATCGTTCCCCCCGGCCGTGTAATGATAC 5 55 0 AAATTGTGACCTAGGTGGACGGCTGGAATTCAACTT 5 117 1 CTTTGATTTTAGGTCTACTGGGGTGTTGGGTTGAAG 5 187 1 GGCTTCCTAGCAATCTCCCAGGCCTTCAACCCAACA 5 210 0 GAAATCCCGGGGGACAATCTTTTTCTA 6 1 1 AGTAGAGTTTAGGGGTTGAAGGCTTTGCGCGTCGTC 6 54 1 CTCCTCCAGCAGCTCCAGCAGGTCCTCCTCTATCTT 6 96 0 TCCCTTAGATACTTCTCCAGGGCTCTTCTTATTATC 6 164 0 CTCATACCCCCAGTCTTGGATACACAGT 7 2 1 ACCAACGGCCCTCAGGGCACTGGCGAGGACC 7 98 0 * ** * ***** * MAP Score: 18.5606 Motif 7 GGGGATGGTGAGGGGTGCGAGCGCAGAGCCCC 2 31 1 GTGCGAGCGCAGAGCCCCAGGGGCGGTGAAGA 2 45 1 TAGGAGGATTAGAGGCGGCGATCCGATAATTA 2 111 0 CTATGTGTATAGGGGCTTGGGTGT 2 140 1 CGCCAAGAGCACGGCCTCCAGGGAAGTATTCG 3 95 1 GAAGTATTCGAGGGCTTCGGGATCAAGATCAA 3 117 1 CAGGTTAACCAGAGCCACACGACAGTTATACC 3 171 1 AGTGTAAGGGCCCGCCAGCTCGATAAGG 4 6 1 TCTGGATGTGAGGTGCGGAGGGTTTGGGCCTG 4 95 1 GCGGAGGGTTTGGGCCTGGAAGAGGGCTATGA 4 109 1 GGCCTGGAAGAGGGCTATGACGACGTCCTT 4 121 1 GTATCATTACACGGCCGGGGGGAACGATGCCA 5 55 1 CTTTGATTTTAGGTCTACTGGGGTGTTGGGTT 5 187 1 TGTTGGGTTGAAGGCCTGGGAGATTGCTAGGA 5 210 1 GAAATCCCGGGGGACAATCTTTT 6 1 1 AGTAGAGTTTAGGGGTTGAAGGCTTTGCGCGT 6 54 1 CTCCTCCAGCAGCTCCAGCAGGTCCTCCTCTA 6 100 0 GATAATAAGAAGAGCCCTGGAGAAGTATCTAA 6 164 1 AACGGCCCTCAGGGCACTGGCGAGGACCTCAG 7 94 0 CAGTGCCCTGAGGGCCGTTGGT 7 107 1 ****** * *** MAP Score: 11.8935 Motif 8 TGCGAGCGCAGAGCCCCAGGGGCGGTGAAGAAGGA 2 46 1 AACAGCGTCTGACCCTCTGTACTCGATAATTATCG 2 85 1 CTGGCCACAAGCCCCCTCGTGGGCTCGGGATTTGT 3 13 0 CGTTACGATAGCCCTCTAGTGCTGGCCACAAGCCC 3 34 0 CCTGGAGGCCGTGCTCTTGGCGTGGCTCTATTGTA 3 82 0 CCAAGAGCACGGCCTCCAGGGAAGTATTCGAGGGC 3 97 1 GTAGATCCAATACCCCCCAGGGTATATTGGCTTTG 3 219 0 AGTGTAAGGGCCCGCCAGCTCGATAAGGGGTG 4 7 1 GGCTATATTAGCCCCTTAGACACCGCGTTTAATCT 4 63 1 CGGAGGGTTTGGGCCTGGAAGAGGGCTATGACGAC 4 110 1 ATAATAAGAAGAGCCCTGGAGAAGTATCTAAGGGA 6 165 1 CTCATACCCCCAGTCTTGGATACACAGTT 7 4 1 TTATCACCGGGTGCTCCTGCTTTGGCCAGCGCGGC 7 60 1 GTCCTCGCCAGTGCCCTGAGGGCCGTTGGT 7 99 1 * ***** * * ** MAP Score: 10.51 Motif 9 TGAGGGGTGCGAGCGCAGAGCCCCAGGGGCGGTGAAG 2 39 1 GGATTATAACAGCGTCTGACCCTCTGTACTCGATAAT 2 78 1 CTCGATAATTATCGGATCGCCGCCTCTAATCCTCCTA 2 106 1 ATCACAAATCCCGAGCCCACGAGGGGGCTTGTG 3 6 1 TTCTGGGCCGTTACGATAGCCCTCTAGTGCTGGCCAC 3 40 0 GCGTGGCTCTATTGTACAACCTTCTGGGCCGTTACGA 3 61 0 AGCCACGCCAAGAGCACGGCCTCCAGGGAAGTATTCG 3 90 1 GAGCCACACGACAGTTATACCCTCCAGGACAATTAGA 3 182 1 AATTTAGTAGATCCAATACCCCCCAGGGTATATTGGC 3 223 0 AGTGTAAGGGCCCGCCAGCTCGATAAGGGGTG 4 5 1 GCCCTCTTCCAGGCCCAAACCCTCCGCACCTCACATC 4 99 0 GCTTCAAGATAGAGGAGGACCTGCTGGAGCTGCTGGA 6 91 1 CGCGCTGGCCAAAGCAGGAGCACCCGGTGATAAGTCT 7 56 0 * * * **** * ** MAP Score: 2.09504