AlignACE 3.0 10/20/99 AlignACE2 -i AP/AP_operons017_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944249595 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 APE0495 156 115aa long hypothetical protein #1 APE0496 198 227aa long hypothetical ribonuclease HII #2 APE2437 300 193aa long hypothetical deoxyribose-phosphate aldolase Motif 1 GAGGCGTCCCCGGCTAAGAGGGGGCGACTCCTCGTT 0 105 0 CTCGTTAGAGCCGCTAGAAGGAGGAGGTTAAAGTCC 0 75 0 CGGCGGTCTACTGGCTAGTCGAGGACTCCCATTCTA 0 23 0 AATATAACCCTTGGTCTGTGGGAGGGGGAATCTAAT 2 108 1 AGGGGGTGTGGAGGTGTATGTCCTCG 0 140 0 GAGAGAGACTCTGCCCGGCGGGCTAGA 1 1 0 ATGTATGAAGCCGGGCTGTGGTGTAGGGCGGCTTGG 1 95 0 TACTAAGCCCTAGGGCTACGGAGGAGGACGTTAGGA 2 269 1 GCGAGGTAGCCAGGATAGTGAGAGAGACTCTGCCCG 1 20 0 AGCCAGTAGACCGCCGAGTCTGGGGCATAGTAGGAC 0 43 1 GAGGGGGTATCCGGATTGCCGTCGGCCAGGGATATA 2 169 1 AGAATAATAGGTGCCTAGAGTTGGCGAGC 2 3 0 CAGGGATATACTGCAGCAGGGTCTAGACAGGCTAGG 2 195 1 ATAGTATAGTTTGGCAGGCGGAGAGGATAA 1 178 1 GCTACCTCGCCTGCAACGTCGTCCCGCGTTCTTTTA 1 46 1 ACAGGCTAGGGAGCCCTGAGGACCTCGCCTCGAGGA 2 221 1 * ** * ***** * MAP Score: 19.2649 Motif 2 CGATAGAATGGGAGTCCTCGACTAGCCAGT 0 20 1 CGACTAGCCAGTAGACCGCCGAGTCTGGGG 0 38 1 GTAGGACTTTAACCTCCTCCTTCTAGCGGC 0 72 1 TAAGAGGGGGCGACTCCTCGTTAGAGCCGC 0 97 0 AACGAGGAGTCGCCCCCTCTTAGCCGGGGA 0 105 1 CCTCGAGGACATACACCTCCACACCCCCT 0 137 1 TCTAGCCCGCCGGGCAGAGTC 1 1 1 ACTATCCTGGCTACCTCGCCTGCAACGTCG 1 37 1 AAGAAAAACGCGCCCAAGCCGCCCTACACC 1 82 1 AGCCGCCCTACACCACAGCCCGGCTTCATA 1 98 1 GCTCGCCAACTCTAGGCACCTAT 2 3 1 ATACATCTTAATACACCTCCTAACCAGTGT 2 68 0 AACTATTAGATTCCCCCTCCCACAGACCAA 2 118 0 GCAATCCGGATACCCCCTCCAGATTAGAGT 2 158 0 GTCCTCAGGGCTCCCTAGCCTGTCTAGACC 2 214 0 GGAGCCCTGAGGACCTCGCCTCGAGGATAG 2 230 1 GATTCCTAACGTCCTCCTCCGTAGCCCTAG 2 278 0 ********** MAP Score: 18.971 Motif 3 CGATAGAATGGGAGTCCTCGACTAGCCAGTAGA 0 20 1 CTAACGAGGAGTCGCCCCCTCTTAGCCGGGGAC 0 103 1 ATGTCCTCGAGGCGTCCCCGGCTAAGAGGGGGC 0 116 0 GTGAGAGAGACTCTGCCCGGCGGGCTAGA 1 6 0 TCACTATCCTGGCTACCTCGCCTGCAACGTCGT 1 35 1 CGCCTGCAACGTCGTCCCGCGTTCTTTTAAAGA 1 53 1 TAAAGAAAAACGCGCCCAAGCCGCCCTACACCA 1 80 1 CGCCCTACACCACAGCCCGGCTTCATACATGAG 1 101 1 GAATCTAATAGTTTTCCCGGCATACTCTAATCT 2 135 1 CCGGATTGCCGTCGGCCAGGGATATACTGCAGC 2 179 1 CCTAGCCTGTCTAGACCCTGCTGCAGTATATCC 2 198 0 AGGTCCTCAGGGCTCCCTAGCCTGTCTAGACCC 2 213 0 AGGGAGCCCTGAGGACCTCGCCTCGAGGATAGA 2 228 1 GTCCTCCTCCGTAGCCCTAGGGCTTAGTAGCGT 2 265 0 **** *** ** * MAP Score: 16.2758 Motif 4 TCGCCTGCAACGTCGTCCCGCGTTCTTTTAAA 1 52 1 TCTAGCCCGCCGGGCAGAGTCTCTCTCAC 1 7 1 GCCCTGAGGACCTCGCCTCGAGGATAGACTCT 2 233 1 TCCGGATTGCCGTCGGCCAGGGATATACTGCA 2 178 1 AGAAAAACGCGCCCAAGCCGCCCTACACCACA 1 83 1 GCTCGCCAACTCTAGGCACCTATTA 2 3 1 GAATGGGAGTCCTCGACTAGCCAGTAGACCGC 0 25 1 CCGCCCTACACCACAGCCCGGCTTCATACATG 1 100 1 CTTTAACCTCCTCCTTCTAGCGGCTCTAACGA 0 78 1 TCTTAGCCGGGGACGCCTCGAGGACATACACC 0 122 1 TATTAGATTCCCCCTCCCACAGACCAAGGGTT 2 113 0 AATCCGGATACCCCCTCCAGATTAGAGTATGC 2 154 0 GCCAGTAGACCGCCGAGTCTGGGGCATAGTAG 0 44 1 TCACTATCCTGGCTACCTCGCCTGCAACGTCG 1 35 1 TTATCCTCTCCGCCTGCCAAACTATACTATTA 1 176 0 AGGTCCTCAGGGCTCCCTAGCCTGTCTAGACC 2 214 0 GTAGCCCTAGGGCTTAGTAGCGTAGAGTCTAT 2 256 0 GCGGCTCTAACGAGGAGTCGCCCCCTCTTAGC 0 97 1 ATTATCTTTAGGCTTTCCACACTCATGTATGA 1 123 0 **** ****** MAP Score: 15.3004 Motif 5 GGAGTCCTCGACTAGCCAGTAGACCGCCGAGTCTG 0 30 1 TTCTAGCGGCTCTAACGAGGAGTCGCCCCCTCTTA 0 92 1 AGTCGCCCCCTCTTAGCCGGGGACGCCTCGAGGAC 0 112 1 TCTAGCCCGCCGGGCAGAGTCTCTC 1 0 1 AGTCTCTCTCACTATCCTGGCTACCTCGCCTGCAA 1 27 1 CGGGCTGTGGTGTAGGGCGGCTTGGGCGCGTTTTT 1 85 0 GGGGTAATCATTTACACTGGTTAGGAGGTGTATTA 2 55 1 CCCGGCATACTCTAATCTGGAGGGGGTATCCGGAT 2 150 1 TGCAGCAGGGTCTAGACAGGCTAGGGAGCCCTGAG 2 206 1 TAGCGTAGAGTCTATCCTCGAGGCGAGGTCCTCAG 2 236 0 ACTCTACGCTACTAAGCCCTAGGGCTACGGAGGAG 2 260 1 **** * ** * ** MAP Score: 13.7259 Motif 6 GTCCTCGACTAGCCAGTAGACCGCCGAGTCTGGGGCATAGT 0 33 1 AGGAGGTTAAAGTCCTACTATGCCCCAGACTCGGCGGTCTA 0 49 0 TCCTCGTTAGAGCCGCTAGAAGGAGGAGGTTAAAGTCCTAC 0 72 0 GCCCCCTCTTAGCCGGGGACGCCTCGAGGACATACACCTCC 0 116 1 ACGACGTTGCAGGCGAGGTAGCCAGGATAGTGAGAGAGACT 1 27 0 AACGCGCCCAAGCCGCCCTACACCACAGCCCGGCTTCATAC 1 88 1 GATTATCTTTAGGCTTTCCACACTCATGTATGAAGCCGGGC 1 115 0 GCCGTCGGCCAGGGATATACTGCAGCAGGGTCTAGACAGGC 2 186 1 GGGTCTAGACAGGCTAGGGAGCCCTGAGGACCTCGCCTCGA 2 213 1 CGTAGCCCTAGGGCTTAGTAGCGTAGAGTCTATCCTCGAGG 2 248 0 **** * * *** * MAP Score: 8.59836 Motif 7 CTACTGGCTAGTCGAGGACTCCCATTCTAT 0 22 0 GTCCTACTATGCCCCAGACTCGGCGGTCTA 0 49 0 CTAACGAGGAGTCGCCCCCTCTTAGCCGGG 0 103 1 TCCTCGAGGCGTCCCCGGCTAAGAGGGGGC 0 116 0 CCGGGGACGCCTCGAGGACATACACCTCCA 0 128 1 GGACATACACCTCCACACCCCCT 0 143 1 GAGACTCTGCCCGGCGGGCTAGA 1 3 0 CGGGCAGAGTCTCTCTCACTATCCTGGCTA 1 20 1 TCCTGGCTACCTCGCCTGCAACGTCGTCCC 1 41 1 CGCGCCCAAGCCGCCCTACACCACAGCCCG 1 90 1 CCCTACACCACAGCCCGGCTTCATACATGA 1 103 1 TTATCCTCTCCGCCTGCCAAACTAT 1 183 0 GCTCGCCAACTCTAGGCACCT 2 1 1 ATTAGATTCCCCCTCCCACAGACCAAGGGT 2 114 0 TCCGGATACCCCCTCCAGATTAGAGTATGC 2 154 0 TATATCCCTGGCCGACGGCAATCCGGATAC 2 175 0 GTCCTCAGGGCTCCCTAGCCTGTCTAGACC 2 214 0 CCCTGAGGACCTCGCCTCGAGGATAGACTC 2 234 1 TCCTCCGTAGCCCTAGGGCTTAGTAGCGTA 2 264 0 ********** MAP Score: 4.2193 Motif 8 GAGTCCTCGACTAGCCAGTAGACCGCCGAGTCTG 0 31 1 GGTTAAAGTCCTACTATGCCCCAGACTCGGCGGT 0 52 0 GGACTTTAACCTCCTCCTTCTAGCGGCTCTAACG 0 75 1 GGAGTCGCCCCCTCTTAGCCGGGGACGCCTCGAG 0 110 1 CGAGGACATACACCTCCACACCCCCT 0 140 1 TCTAGCCCGCCGGGCAGAGTCTCTC 1 1 1 GTCTCTCTCACTATCCTGGCTACCTCGCCTGCAA 1 28 1 GAACGCGGGACGACGTTGCAGGCGAGGTAGCCAG 1 43 0 AAGAAAAACGCGCCCAAGCCGCCCTACACCACAG 1 82 1 AGCCGCCCTACACCACAGCCCGGCTTCATACATG 1 98 1 TTATCCTCTCCGCCTGCCAAACTATACT 1 180 0 ATCCGGATACCCCCTCCAGATTAGAGTATGCCGG 2 151 0 GAGGGGGTATCCGGATTGCCGTCGGCCAGGGATA 2 169 1 GCAGCAGGGTCTAGACAGGCTAGGGAGCCCTGAG 2 207 1 TAACGTCCTCCTCCGTAGCCCTAGGGCTTAGTAG 2 268 0 * * ****** ** MAP Score: 2.68024 Motif 9 CCTCGACTAGCCAGTAGACCGCCGAGTCTGGGGC 0 35 1 CGGCTCTAACGAGGAGTCGCCCCCTCTTAGCCGG 0 98 1 CCCCTCTTAGCCGGGGACGCCTCGAGGACATACA 0 118 1 TCTAGCCCGCCGGGCAGAGTCTCTC 1 1 1 CTCTCACTATCCTGGCTACCTCGCCTGCAACGTC 1 32 1 AAAGAAAAACGCGCCCAAGCCGCCCTACACCACA 1 81 1 AGCCGCCCTACACCACAGCCCGGCTTCATACATG 1 98 1 TTATCCTCTCCGCCTGCCAAACTATACT 1 180 0 GAGGGGGTATCCGGATTGCCGTCGGCCAGGGATA 2 169 1 GCAGCAGGGTCTAGACAGGCTAGGGAGCCCTGAG 2 207 1 GCTAGGGAGCCCTGAGGACCTCGCCTCGAGGATA 2 225 1 ACGCTACTAAGCCCTAGGGCTACGGAGGAGGACG 2 265 1 ** * * **** ** MAP Score: 1.44792