AlignACE 3.0 10/20/99 AlignACE2 -i AP/AP_operons019_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944249657 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 APE0514 71 352aa long hypothetical sun protein #1 APE1097 42 224aa long hypothetical protein #2 APE1098 274 388aa long hypothetical fmu protein #3 APE2464_APE2465 180 APE2464: 390aa long hypothetical phoH like protein, APE2465: 420aa long hypothetical fmu protein Motif 1 CCGGAAGACACCCGGAGGGGCCGTCGGACTATGTCG 2 214 0 CCCGCCTGGGGCAGCTCTGGGCGGGGGATGCTATGA 2 82 1 GGCCCATGGAGCCGGGCGGGGGGCTCGTTAAACCCC 2 127 0 TCCGGTTTTCGCCGGGCTGGATGACGTGGGGTCAAT 2 245 1 CGCTAGACGGGCAACCTGGGTTGCAGGCTATAGAGG 3 115 0 AGAGCTGCCCCAGGCGGGGGGTGACGGCGCTCGGAC 2 64 0 ATATAGTGGCGCTGGACTGGTGGGCCCGGC 0 51 1 CCCAGTTGTACCTGCTTGGGATGCCAACCTAT 2 6 0 CCAAGCAGGTACAACTGGGGGCGGTGAGTGCAACCC 2 23 1 AGCGCTGCTTGAGGCGTTGGAGGCTGCTGAAAGGAG 3 38 0 ATAGCCACCCGGGTATTCGTGTTTACATT 0 3 1 AACCCTAGGGCACACCGGGGTTGATAACGCTTGGCC 2 159 0 CGGCGCTCGGACTTGCCGGGTTGCACTCACCGCCCC 2 40 0 GCGCTCTAATCTCCCTTGGGCCGTAGGTCAGCAAAT 3 69 1 GCGGGGGATGCTATGAGTGGAAGTCGGGGTTTAACG 2 102 1 ** ** **** * * MAP Score: 27.2339 Motif 2 CATAGCATCCCCCGCCCAGAGCTGCCCCAGGCGGGG 2 81 0 CAAATACGGTGCACCCCTCTATAGCCTGCAACCCAG 3 100 1 TCTATAGCCTGCAACCCAGGTTGCCCGTCTAGCGAA 3 117 1 GGCGGTGAGTGCAACCCGGCAAGTCCGAGCGCCGTC 2 42 1 CCAAGCGTTATCAACCCCGGTGTGCCCTAGGGTTTC 2 161 1 AAAACCGGAAGACACCCGGAGGGGCCGTCGGACTAT 2 218 0 CTCCCTCTTGCTGACCTGCGCTGGCTTCCTCCTTT 3 9 1 ATAGCCACCCGGGTATTCGTGTTTACATT 0 3 1 GCCGGGCCCACCAGTCCAGCGCCACTATATT 0 50 0 GGGGTTTAACGAGCCCCCCGCCCGGCTCCATGGGCC 2 127 1 TTGCACTCACCGCCCCCAGTTGTACCTGCTTGGGAT 2 20 0 CCCACGTCATCCAGCCCGGCGAAAACCGGAAGACAC 2 239 0 TCGGACTATGTCGGCCCATTCATCCCGTGAGAAACC 2 191 0 AAGTCCGAGCGCCGTCACCCCCCGCCTGGGGCAGCT 2 62 1 GCGAGGCCCGTTATAGAGAGGGCCTACA 1 24 0 ** **** * *** MAP Score: 22.8392 Motif 3 AATGTAAACACGAATACCCGGGTGGCTAT 0 4 0 GCCGGGCCCACCAGTCCAGCGCCACTATA 0 52 0 TAGGCCCTCTCTATAACGGGCCTCGC 1 26 1 ATAGGTTGGCATCCCAAGCAGGTACAACTGGG 2 7 1 GGGGCGGTGAGTGCAACCCGGCAAGTCCGAGCGCC 2 40 1 CCCAGGCGGGGGGTGACGGCGCTCGGACTTGCCGG 2 57 0 CCCGCCCAGAGCTGCCCCAGGCGGGGGGTGACGGC 2 72 0 TCCACTCATAGCATCCCCCGCCCAGAGCTGCCCCA 2 88 0 CGGGGTTTAACGAGCCCCCCGCCCGGCTCCATGGG 2 126 1 GAAACCCTAGGGCACACCGGGGTTGATAACGCTTG 2 162 0 GTGCCCTAGGGTTTCTCACGGGATGAATGGGCCGA 2 182 1 CGACATAGTCCGACGGCCCCTCCGGGTGTCTTCCG 2 214 1 CATCCAGCCCGGCGAAAACCGGAAGACACCCGGAG 2 233 0 GCTGAAAGGAGGAAGCCAGCGCAGGTCAGCAAGAG 3 14 0 TTTCAGCAGCCTCCAACGCCTCAAGCAGCGCTCTA 3 42 1 CAGCAAATACGGTGCACCCCTCTATAGCCTGCAAC 3 97 1 TTCGCTAGACGGGCAACCTGGGTTGCAGGCTATAG 3 118 0 ** ******* * MAP Score: 20.7223 Motif 4 GCCGGGCCCACCAGTCCAGCGCCACTATATTATCC 0 46 0 TATAGAGAGGGCCTACAACCTCAGGGCCGAC 1 0 0 GGTTGTAGGCCCTCTCTATAACGGGCCTCGC 1 21 1 CACTCACCGCCCCCAGTTGTACCTGCTTGGGATGCCAACCT 2 12 0 GGGTGACGGCGCTCGGACTTGCCGGGTTGCACTCACCGCCC 2 41 0 CCCAGAGCTGCCCCAGGCGGGGGGTGACGGCGCTCGGACTT 2 62 0 CCCGACTTCCACTCATAGCATCCCCCGCCCAGAGCTGCCCC 2 89 0 CGGGCGGGGGGCTCGTTAAACCCCGACTTCCACTCATAGCA 2 110 0 ATAACGCTTGGCCCATGGAGCCGGGCGGGGGGCTCGTTAAA 2 131 0 CATGGGCCAAGCGTTATCAACCCCGGTGTGCCCTAGGGTTT 2 155 1 GACTATGTCGGCCCATTCATCCCGTGAGAAACCCTAGGGCA 2 183 0 CCCGGCGAAAACCGGAAGACACCCGGAGGGGCCGTCGGACT 2 220 0 TCCATTGACCCCACGTCATCCAGCCCGGCGAAAACCGGA 2 245 0 CTCCCTCTTGCTGACCTGCGCTGGCTTCCTCCTT 3 3 1 CTGGCTTCCTCCTTTCAGCAGCCTCCAACGCCTCAAGCAGC 3 30 1 CTCAAGCAGCGCTCTAATCTCCCTTGGGCCGTAGGTCAGCA 3 61 1 ATACGGTGCACCCCTCTATAGCCTGCAACCCAGGTTGCCCG 3 103 1 **** ** ** ** MAP Score: 19.4881 Motif 5 ATAGCCACCCGGGTATTCGTGTTTACATT 0 3 1 GCCCACCAGTCCAGCGCCACTATATTATCCTCGTTT 0 40 0 ATAGGTTGGCATCCCAAGCAGGTACAACTGGGGG 2 8 1 CGGGTTGCACTCACCGCCCCCAGTTGTACCTGCTTG 2 24 0 GGCGGTGAGTGCAACCCGGCAAGTCCGAGCGCCGTC 2 42 1 CCGAGCGCCGTCACCCCCCGCCTGGGGCAGCTCTGG 2 66 1 CCCGCCTGGGGCAGCTCTGGGCGGGGGATGCTATGA 2 82 1 GGTTTAACGAGCCCCCCGCCCGGCTCCATGGGCCAA 2 129 1 CCAAGCGTTATCAACCCCGGTGTGCCCTAGGGTTTC 2 161 1 GTCGGCCCATTCATCCCGTGAGAAACCCTAGGGCAC 2 182 0 TCCGGTTTTCGCCGGGCTGGATGACGTGGGGTCAAT 2 245 1 GGAAGCCAGCGCAGGTCAGCAAGAGGGAG 3 3 0 CCTTTCAGCAGCCTCCAACGCCTCAAGCAGCGCTCT 3 40 1 AACGCCTCAAGCAGCGCTCTAATCTCCCTTGGGCCG 3 56 1 CAAATACGGTGCACCCCTCTATAGCCTGCAACCCAG 3 100 1 TCTATAGCCTGCAACCCAGGTTGCCCGTCTAGCGAA 3 117 1 *** *** ** * * MAP Score: 17.313 Motif 6 TTGCACTCACCGCCCCCAGTTGTACCTGCTTGGGATGCCAACC 2 13 0 CAAATACGGTGCACCCCTCTATAGCCTGCAACCCAGGTTGCCC 3 100 1 GCGGTGAGTGCAACCCGGCAAGTCCGAGCGCCGTCACCCCCCG 2 43 1 TGAGGTTGTAGGCCCTCTCTATAACGGGCCTCGC 1 18 1 CTCCCTCTTGCTGACCTGCGCTGGCTTCCTCCT 3 0 1 GAGCGCCGTCACCCCCCGCCTGGGGCAGCTCTGGGCGGGGGAT 2 68 1 GCGCTGGCTTCCTCCTTTCAGCAGCCTCCAACGCCTCAAGCAG 3 27 1 GGGGTTTAACGAGCCCCCCGCCCGGCTCCATGGGCCAAGCGTT 2 127 1 TCCATTGACCCCACGTCATCCAGCCCGGCGAAAACCGG 2 246 0 TCCGACGGCCCCTCCGGGTGTCTTCCGGTTTTCGCCGGGCTGG 2 222 1 GCCGGGCCCACCAGTCCAGCGCCACTATATTATCCTCGTT 0 41 0 CCCGGAGGGGCCGTCGGACTATGTCGGCCCATTCATCCCGTGA 2 197 0 TCTCCTGGGCCAATATTCGCTAGACGGGCAACCTGGGTTGCAG 3 125 0 * ** * * ** ** * MAP Score: 16.2335 Motif 7 GCATCCCAAGCAGGTACAACTGGGGGCGGTGAGTGCAACCCGGCAA 2 18 1 TGAGTGCAACCCGGCAAGTCCGAGCGCCGTCACCCCCCGCCTGGGG 2 47 1 CATAGCATCCCCCGCCCAGAGCTGCCCCAGGCGGGGGGTGACGGCG 2 71 0 GAGTGGAAGTCGGGGTTTAACGAGCCCCCCGCCCGGCTCCATGGGC 2 116 1 CCATTCATCCCGTGAGAAACCCTAGGGCACACCGGGGTTGATAACG 2 166 0 ATGAATGGGCCGACATAGTCCGACGGCCCCTCCGGGTGTCTTCCGG 2 204 1 CCATTGACCCCACGTCATCCAGCCCGGCGAAAACCGGAAGACACCC 2 237 0 CTCCCTCTTGCTGACCTGCGCTGGCTTCCTCCTTTCAGCAGC 3 6 1 CAGCCTCCAACGCCTCAAGCAGCGCTCTAATCTCCCTTGGGCCGTA 3 48 1 GGCCGTAGGTCAGCAAATACGGTGCACCCCTCTATAGCCTGCAACC 3 87 1 CCCTCTATAGCCTGCAACCCAGGTTGCCCGTCTAGCGAATATTGGC 3 114 1 * * * * * ** * ** MAP Score: 11.0692 Motif 8 CGTTTAAATGTAAACACGAATACCCGGGTGGCTAT 0 3 0 ATAATATAGTGGCGCTGGACTGGTGGGCCCGGC 0 48 1 TTATAGAGAGGGCCTACAACCTCAGGGCCGAC 1 0 0 TGAGGTTGTAGGCCCTCTCTATAACGGGCCTCGC 1 18 1 GTTGGCATCCCAAGCAGGTACAACTGGGGGCGGTGAGTGCAA 2 14 1 GCGGTGAGTGCAACCCGGCAAGTCCGAGCGCCGTCACCCCCC 2 43 1 TCCGAGCGCCGTCACCCCCCGCCTGGGGCAGCTCTGGGCGGG 2 65 1 CTATGAGTGGAAGTCGGGGTTTAACGAGCCCCCCGCCCGGCT 2 112 1 TAACGAGCCCCCCGCCCGGCTCCATGGGCCAAGCGTTATCAA 2 133 1 CCGTGAGAAACCCTAGGGCACACCGGGGTTGATAACGCTTGG 2 161 0 CCTAGGGTTTCTCACGGGATGAATGGGCCGACATAGTCCGAC 2 186 1 GCCGACATAGTCCGACGGCCCCTCCGGGTGTCTTCCGGTTTT 2 212 1 CTCCGGGTGTCTTCCGGTTTTCGCCGGGCTGGATGACGTGGG 2 233 1 GGAGGAAGCCAGCGCAGGTCAGCAAGAGGGAG 3 0 0 GCGCTCTAATCTCCCTTGGGCCGTAGGTCAGCAAATACGGTG 3 69 1 GGCAACCTGGGTTGCAGGCTATAGAGGGGTGCACCGTATTTG 3 100 0 CAGGTTGCCCGTCTAGCGAATATTGGCCCAGGAGAGTATAGT 3 133 1 * * * ** **** * MAP Score: 10.0423 Motif 9 ATAGCCACCCGGGTATTCGTGTTTACATTTAA 0 3 1 TTGCACTCACCGCCCCCAGTTGTACCTGCTTGGGATGCC 2 17 0 GGCGGTGAGTGCAACCCGGCAAGTCCGAGCGCCGTCACC 2 42 1 CCGGCAAGTCCGAGCGCCGTCACCCCCCGCCTGGGGCAG 2 57 1 CGAGCGCCGTCACCCCCCGCCTGGGGCAGCTCTGGGCGG 2 67 1 CATAGCATCCCCCGCCCAGAGCTGCCCCAGGCGGGGGGT 2 78 0 TGCTATGAGTGGAAGTCGGGGTTTAACGAGCCCCCCGCC 2 110 1 GGTTTAACGAGCCCCCCGCCCGGCTCCATGGGCCAAGCG 2 129 1 CAAGCGTTATCAACCCCGGTGTGCCCTAGGGTTTCTCAC 2 162 1 GGCCGACATAGTCCGACGGCCCCTCCGGGTGTCTTCCGG 2 211 1 GTCCGACGGCCCCTCCGGGTGTCTTCCGGTTTTCGCCGG 2 221 1 CCAGCCCGGCGAAAACCGGAAGACACCCGGAGGGGCCGT 2 226 0 CCCACGTCATCCAGCCCGGCGAAAACCGGAAGACACCCG 2 236 0 GGAAGCCAGCGCAGGTCAGCAAGAGGGAG 3 0 0 GCTGAAAGGAGGAAGCCAGCGCAGGTCAGCAAGAGGGAG 3 10 0 GCTGACCTACGGCCCAAGGGAGATTAGAGCGCTGCTTGA 3 62 0 TCTATAGCCTGCAACCCAGGTTGCCCGTCTAGCGAATAT 3 117 1 GAATATTGGCCCAGGAGAGTATAGTTATGTCTATCCCTG 3 150 1 *** ***** * * MAP Score: 5.37434 Motif 10 GGATAATATAGTGGCGCTGGACTGGTGGGCCCGGC 0 46 1 TGAGGTTGTAGGCCCTCTCTATAACGGGCCTCGC 1 18 1 CTCACCGCCCCCAGTTGTACCTGCTTGGGATGCCAACCTAT 2 7 0 ACAACTGGGGGCGGTGAGTGCAACCCGGCAAGTCCGAGCGCCGT 2 33 1 CCGGCAAGTCCGAGCGCCGTCACCCCCCGCCTGGGGCAGCTCTG 2 57 1 ACTTCCACTCATAGCATCCCCCGCCCAGAGCTGCCCCAGGCGGG 2 82 0 AGCCGGGCGGGGGGCTCGTTAAACCCCGACTTCCACTCATAGCA 2 110 0 CTCCATGGGCCAAGCGTTATCAACCCCGGTGTGCCCTAGGGTTT 2 152 1 CGGACTATGTCGGCCCATTCATCCCGTGAGAAACCCTAGGGCAC 2 182 0 GGGCCGACATAGTCCGACGGCCCCTCCGGGTGTCTTCCGGTTTT 2 210 1 CGGGTGTCTTCCGGTTTTCGCCGGGCTGGATGACGTGGGGTCAA 2 236 1 CTCCCTCTTGCTGACCTGCGCTGGCTTCCTCCTT 3 0 1 GCGCTGGCTTCCTCCTTTCAGCAGCCTCCAACGCCTCAAGCAGC 3 27 1 AACGCCTCAAGCAGCGCTCTAATCTCCCTTGGGCCGTAGGTCAG 3 56 1 CAAATACGGTGCACCCCTCTATAGCCTGCAACCCAGGTTGCCCG 3 100 1 * ** * * *** * * MAP Score: 4.67282 Motif 11 GATAATATAGTGGCGCTGGACTGGTGGGCCCGGC 0 47 1 CCTGAGGTTGTAGGCCCTCTCTATAACGGGCCTC 1 16 1 GTGAGTGCAACCCGGCAAGTCCGAGCGCCGTCAC 2 46 1 CTGCCCCAGGCGGGGGGTGACGGCGCTCGGACTT 2 62 0 ACCCCCCGCCTGGGGCAGCTCTGGGCGGGGGATG 2 78 1 GGGATGCTATGAGTGGAAGTCGGGGTTTAACGAG 2 106 1 GGTTTAACGAGCCCCCCGCCCGGCTCCATGGGCC 2 129 1 TGAGAAACCCTAGGGCACACCGGGGTTGATAACG 2 166 0 GACATAGTCCGACGGCCCCTCCGGGTGTCTTCCG 2 215 1 GTCATCCAGCCCGGCGAAAACCGGAAGACACCCG 2 236 0 GCAGGCTATAGAGGGGTGCACCGTATTTGCTGAC 3 95 0 CCCCTCTATAGCCTGCAACCCAGGTTGCCCGTCT 3 113 1 * **** *** ** MAP Score: 3.36925 Motif 12 ATAGCCACCCGGGTATTCGTGTTTACATTTAA 0 3 1 ATATAGTGGCGCTGGACTGGTGGGCCCGGC 0 51 1 AGGTTGGCATCCCAAGCAGGTACAACTGGGGGCGGTGAG 2 12 1 GGCGGTGAGTGCAACCCGGCAAGTCCGAGCGCCGTCACC 2 42 1 CAAGTCCGAGCGCCGTCACCCCCCGCCTGGGGCAGCTCT 2 61 1 CCCGCCTGGGGCAGCTCTGGGCGGGGGATGCTATGAGTG 2 82 1 GGCCCATGGAGCCGGGCGGGGGGCTCGTTAAACCCCGAC 2 124 0 CGTTATCAACCCCGGTGTGCCCTAGGGTTTCTCACGGGA 2 166 1 GGCCGACATAGTCCGACGGCCCCTCCGGGTGTCTTCCGG 2 211 1 TCCGGTTTTCGCCGGGCTGGATGACGTGGGGTCAATGGA 2 245 1 CTCCCTCTTGCTGACCTGCGCTGGCTTCCTCCTTTCAG 3 9 1 TTAGAGCGCTGCTTGAGGCGTTGGAGGCTGCTGAAAGGA 3 39 0 CGTATTTGCTGACCTACGGCCCAAGGGAGATTAGAGCGC 3 69 0 *** **** ** * MAP Score: 1.67505 Motif 13 GTTATAGAGAGGGCCTACAACCTCAGGGCCGAC 1 0 0 GTTGGCATCCCAAGCAGGTACAACTGGGGGCGGTGAGTGCAAC 2 14 1 GCGGTGAGTGCAACCCGGCAAGTCCGAGCGCCGTCACCCCCCG 2 43 1 GCGCCGTCACCCCCCGCCTGGGGCAGCTCTGGGCGGGGGATGC 2 70 1 AGCCGGGCGGGGGGCTCGTTAAACCCCGACTTCCACTCATAGC 2 111 0 CTCCATGGGCCAAGCGTTATCAACCCCGGTGTGCCCTAGGGTT 2 152 1 CGGACTATGTCGGCCCATTCATCCCGTGAGAAACCCTAGGGCA 2 183 0 CTCCGGGTGTCTTCCGGTTTTCGCCGGGCTGGATGACGTGGGG 2 233 1 CTCCCTCTTGCTGACCTGCGCTGGCTTCCTCCT 3 0 1 GCGCTGGCTTCCTCCTTTCAGCAGCCTCCAACGCCTCAAGCAG 3 27 1 CAAATACGGTGCACCCCTCTATAGCCTGCAACCCAGGTTGCCC 3 100 1 * ** * *** ** * MAP Score: 0.339188