AlignACE 3.0 10/20/99 AlignACE2 -i AP/AP_operons031_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944249853 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 APE0985 300 347aa long hypothetical protein #1 APE0986 193 215aa long hypothetical protein #2 APE1366 33 157aa long hypothetical 6,7-dimethyl-8-ribityllumazine synthase #3 APES051 52 56aa long hypothetical protein #4 APE1454 300 835aa long hypothetical cation-transporting ATPase #5 APE2112 167 194aa long hypothetical protein #6 APE2571 75 621aa long hypothetical heavy-metal transporting ATPase Motif 1 ACCCGTGTTAGAGTCGGAGGTTAAAAACTGAG 0 48 1 TACCAGGTTTATGGCGGGGGCCTTAGTGCCGC 0 208 1 CTATATAACTGAGTCTAGGGCCTTGGGGAGTA 1 40 0 AGATGGATGGGAGGCTTCGGCCTTCTGGATTG 1 70 1 TCTGGATTGGGACGCGGTGTCCCGGGTAAGGT 1 93 1 CCCGGGTAAGGTGTCGGCGGCTTGGAGGGCAG 1 113 1 AGAGGGTTCCATCGCTAGGGCTGTCGATTCTC 1 160 1 TGTTCATGGCGGCGCGAGGAGCTGTATCTAGT 4 25 0 TAGTCTCTCCAGGGCTGAGGGCTGGCGATACT 4 64 1 CTGGAAGAAGATGACGGGGAGCCGGTGGCTGT 5 12 1 CGGGGAGCCGGTGGCTGTGGCTCAGGAACAAT 5 26 1 CCAGCTGATAGACACTGTGGTCTTCCTATCAC 5 75 1 CTCAACTCTGGAGGCTTCGGGCGAGAGGAGGG 5 125 0 * ***** **** MAP Score: 16.1384 Motif 2 CTGGGTCTCACCACACGTCAGTAGAATCAGGAGCTGTG 4 98 1 AAATATTACTCCCCAAGGCCCTAGACTCAGTTATATAG 1 34 1 TATCGCCAGCCCTCAGCCCTGGAGAGACTAATTTGGAT 4 56 0 TCATACCCCTCCTCTCGCCCGAAGCCTCCAGAGTTGAG 5 119 1 TTATACCTGCCCTCCAAGCCGCCGACACCTTACCCGGG 1 113 0 AGAGTTGAGCCCGTCAGCCTGTCTACACT 5 148 1 AGGGTTCCATCGCTAGGGCTGTCGATTCTCTGAGGAAC 1 162 1 GCGTCCCAATCCAGAAGGCCGAAGCCTCCCATCCATCT 1 70 0 AGATACAGCTCCTCGCGCCGCCATGAACATCCAAATTA 4 28 1 GTATTCAAAACGTTTTGACACCATATACTAGCTTTCCT 0 173 0 AACTGAGTGTCCCCCCGCTGGCAGAGGGGCACCCTCTG 0 73 1 ** * * * * *** * MAP Score: 13.5658 Motif 3 GTCAGTAGAATCAGGAGCTGTGGAAGTAATACC 4 114 1 AATTAGTCTCTCCAGGGCTGAGGGCTGGCGATA 4 61 1 TGACGGGGAGCCGGTGGCTGTGGCTCAGGAACA 5 23 1 GAGTGTCCCCCCGCTGGCAGAGGGGCACCCTCT 0 77 1 GAGGCTTCGGGCGAGAGGAGGGGTATGATGTAG 5 114 0 TATAACTGAGTCTAGGGCCTTGGGGAGTAATAT 1 36 0 ATACGGGAGTTTTGGAGGTGAGGATGAA 3 5 0 TATCATACGGCCCGGGTGACCGGTATTACGAGC 0 111 1 GAATACCAGGTTTATGGCGGGGGCCTTAGTGCC 0 205 1 GGGTTCCATCGCTAGGGCTGTCGATTCTCTGAG 1 163 1 GTGTCGGCGGCTTGGAGGGCAGGTATAAGCCTA 1 123 1 GGATTGGGACGCGGTGTCCCGGGTAAGGTGTCG 1 96 1 GTGACCGGTATTACGAGCATTGGATGAGGCTTT 0 126 1 GGGCTCAACTCTGGAGGCTTCGGGCGAGAGGAG 5 127 0 GAAACCCGTGTTAGAGTCGGAGGTTAAAAACTG 0 45 1 CAGTTATATAGATGGATGGGAGGCTTCGGCCTT 1 61 1 ** ***** * ** MAP Score: 13.1974 Motif 4 TCTATATAACTGAGTCTAGGGCCTTGGGGAGTAATATTTAG 1 32 0 ATACAGAGGGTGCCCCTCTGCCAGCGGGGGGACACTCAGTT 0 73 0 TCCAAATTAGTCTCTCCAGGGCTGAGGGCTGGCGATACTTC 4 57 1 ATGGGAGGCTTCGGCCTTCTGGATTGGGACGCGGTGTCCCG 1 76 1 CCAATGCTCGTAATACCGGTCACCCGGGCCGTATGATACAG 0 108 0 ATTGGGACGCGGTGTCCCGGGTAAGGTGTCGGCGGCTTGGA 1 98 1 CCACAGCTCCTGATTCTACTGACGTGTGGTGAGACCCAGGA 4 96 0 GCTCAACTCTGGAGGCTTCGGGCGAGAGGAGGGGTATGATG 5 117 0 AGTGTAGACAGGCTGACGGGCTCAACTCTGGAG 5 144 0 TTTGGAGGAGTATAGCTTGGAAGAAGGGCGGCACTAAGGCC 0 226 0 CAAAACGTTTTGAATACCAGGTTTATGGCGGGGGCCTTAGT 0 194 1 AGGGCAGGTATAAGCCTAGTCTAGAGGGTTCCATCGCTAGG 1 138 1 GGGAATATCCTGGTTCCAACTAGGCGGGTGCAT 0 2 0 GAAGATGACGGGGAGCCGGTGGCTGTGGCTCAGGAACAATC 5 18 1 ATGAGGCTTTTAATTCTTATGGAGAGGAAAGCTAGTATATG 0 149 1 CTAATTTGGATGTTCATGGCGGCGCGAGGAGCTGTATCTAG 4 26 0 GGATATTCCCGGGAAACCCGTGTTAGAGTCGGAGGTTAAAA 0 33 1 ** ** ** *** * MAP Score: 11.7484 Motif 5 GTCCCCCCGCTGGCAGAGGGGCACCCTCTGTATCATAC 0 81 1 TGTATCATACGGCCCGGGTGACCGGTATTACGAGCATT 0 109 1 CCAGGTTTATGGCGGGGGCCTTAGTGCCGCCCTTCTTC 0 210 1 TACTCCCCAAGGCCCTAGACTCAGTTATATAGATGGAT 1 40 1 CAATCCAGAAGGCCGAAGCCTCCCATCCATCTATATAA 1 64 0 TCGGCCTTCTGGATTGGGACGCGGTGTCCCGGGTAAGG 1 86 1 GCGGTGTCCCGGGTAAGGTGTCGGCGGCTTGGAGGGCA 1 106 1 AGGTGTCGGCGGCTTGGAGGGCAGGTATAAGCCTAGTC 1 121 1 TGTTCATGGCGGCGCGAGGAGCTGTATCTAGTTTTTAA 4 19 0 AGTCTCTCCAGGGCTGAGGGCTGGCGATACTTCCTGGG 4 65 1 TGGAAGAAGATGACGGGGAGCCGGTGGCTGTGGCTCAG 5 13 1 GGGGAGCCGGTGGCTGTGGCTCAGGAACAATCTTAGCA 5 27 1 **** * * * * * * MAP Score: 10.7906 Motif 6 ATGCACCCGCCTAGTTGGAACCAGGATATTCCCGGGA 0 1 1 AACCAGGATATTCCCGGGAAACCCGTGTTAGAGTCGGAGGTTAAAA 0 28 1 CGTAATACCGGTCACCCGGGCCGTATGATACAGAGGGTGCCCCTCT 0 95 0 TTAATTCTTATGGAGAGGAAAGCTAGTATATGGTGTCAAAACGTTT 0 158 1 ACTGAGTCTAGGGCCTTGGGGAGTAATATTTAGGCGTTAAGAATAA 1 19 0 GACTCAGTTATATAGATGGATGGGAGGCTTCGGCCTTCTGGATTGG 1 57 1 CTTCTGGATTGGGACGCGGTGTCCCGGGTAAGGTGTCGGCGGCTTG 1 91 1 TAAGGTGTCGGCGGCTTGGAGGGCAGGTATAAGCCTAGTCTAGAGG 1 119 1 ATAAGCCTAGTCTAGAGGGTTCCATCGCTAGGGCTGTCGATTCTCT 1 147 1 TCTAAGTATAGATGTTAAGCTATTTCCGGTTTA 2 6 1 GATGTTCATGGCGGCGCGAGGAGCTGTATCTAGTTTTTAAGGTTTA 4 13 0 CTCACCACACGTCAGTAGAATCAGGAGCTGTGGAAGTAATACCTAG 4 104 1 TTCTGGAAGAAGATGACGGGGAGCCGGTGGCTGTGGCTCA 5 4 1 GAGGCTTCGGGCGAGAGGAGGGGTATGATGTAGAATGCTAGTGATA 5 101 0 AGTGTAGACAGGCTGACGGGCTCAACTCTGGAGGCTTCGGGCGAGA 5 131 0 * * ** * * * ** * MAP Score: 10.2783 Motif 7 AACCAGGATATTCCCGGGAAACCCGTGTTAGAGT 0 28 1 CGGAGGTTAAAAACTGAGTGTCCCCCCGCTGGCA 0 62 1 GTCCCCCCGCTGGCAGAGGGGCACCCTCTGTATC 0 81 1 TGTATCATACGGCCCGGGTGACCGGTATTACGAG 0 109 1 TTATGGCGGGGGCCTTAGTGCCGCCCTTCTTCCA 0 216 1 TACTCCCCAAGGCCCTAGACTCAGTTATATAGAT 1 40 1 CAATCCAGAAGGCCGAAGCCTCCCATCCATCTAT 1 68 0 TTCTGGATTGGGACGCGGTGTCCCGGGTAAGGTG 1 92 1 TAATTTGGATGTTCATGGCGGCGCGAGGAGCTGT 4 32 0 CTGGCGATACTTCCTGGGTCTCACCACACGTCAG 4 85 1 GTGGAAGTAATACCTAGGAAACTCCAGCAAACTA 4 133 1 TGGAAGAAGATGACGGGGAGCCGGTGGCTGTGGC 5 13 1 GCTAAGATTGTTCCTGAGCCACAGCCACCGGCTC 5 30 0 **** *** * * * MAP Score: 8.7278 Motif 8 CAACTCTGGAGGCTTCGGGCGAGAGGAGGGGTATGA 5 119 0 GGAAGAAGATGACGGGGAGCCGGTGGCTGTGGCTCA 5 14 1 ATATAACTGAGTCTAGGGCCTTGGGGAGTAATATTT 1 34 0 ATCTTAGCACGTGGGTGAGCCAGCTGATAGACACTG 5 56 1 CACGTCAGTAGAATCAGGAGCTGTGGAAGTAATACC 4 111 1 TCGGCCTTCTGGATTGGGACGCGGTGTCCCGGGTAA 1 86 1 GTCTCTCCAGGGCTGAGGGCTGGCGATACTTCCTGG 4 66 1 CGGGAAACCCGTGTTAGAGTCGGAGGTTAAAAACTG 0 42 1 CGGGTAAGGTGTCGGCGGCTTGGAGGGCAGGTATAA 1 115 1 TTATATAGATGGATGGGAGGCTTCGGCCTTCTGGAT 1 64 1 CCAGGTTTATGGCGGGGGCCTTAGTGCCGCCCTTCT 0 210 1 ACCCTCTGTATCATACGGCCCGGGTGACCGGTATTA 0 103 1 AGTGTAGACAGGCTGACGGGCTCAACTCT 5 148 0 TAAATACGGGAGTTTTGGAGGTGAGGATGAA 3 5 0 * * ***** * ** MAP Score: 8.39414 Motif 9 ATATCCTGGTTCCAACTAGGCGGGTGCAT 0 3 0 CCAGGATATTCCCGGGAAACCCGTGTTAGAGTCGGA 0 30 1 GAGGGTGCCCCTCTGCCAGCGGGGGGACACTCAGTT 0 73 0 CGTAATACCGGTCACCCGGGCCGTATGATACAGAGG 0 105 0 CTAAATATTACTCCCCAAGGCCCTAGACTCAGTTAT 1 32 1 CCGCGTCCCAATCCAGAAGGCCGAAGCCTCCCATCC 1 74 0 TCTGGATTGGGACGCGGTGTCCCGGGTAAGGTGTCG 1 93 1 CTTATACCTGCCCTCCAAGCCGCCGACACCTTACCC 1 116 0 CTAGATACAGCTCCTCGCGCCGCCATGAACATCCAA 4 26 1 CCAAATTAGTCTCTCCAGGGCTGAGGGCTGGCGATA 4 58 1 TCCTGGGTCTCACCACACGTCAGTAGAATCAGGAGC 4 96 1 GGAAGAAGATGACGGGGAGCCGGTGGCTGTGGCTCA 5 14 1 CATCATACCCCTCCTCTCGCCCGAAGCCTCCAGAGT 5 117 1 * * * ***** ** MAP Score: 7.83465 Motif 10 TCCCCCCGCTGGCAGAGGGGCACCCTCTGTATCATA 0 82 1 TGTATCATACGGCCCGGGTGACCGGTATTACGAGCA 0 109 1 CCAGGTTTATGGCGGGGGCCTTAGTGCCGCCCTTCT 0 210 1 ATGGATGGGAGGCTTCGGCCTTCTGGATTGGGACGC 1 72 1 TTCTGGATTGGGACGCGGTGTCCCGGGTAAGGTGTC 1 92 1 CGGGTAAGGTGTCGGCGGCTTGGAGGGCAGGTATAA 1 115 1 GTCTCTCCAGGGCTGAGGGCTGGCGATACTTCCTGG 4 66 1 AAGATGACGGGGAGCCGGTGGCTGTGGCTCAGGAAC 5 19 1 CAACTCTGGAGGCTTCGGGCGAGAGGAGGGGTATGA 5 119 0 *** **** * ** MAP Score: 4.52023 Motif 11 CCGGGAATATCCTGGTTCCAACTAGGCGGGTGCAT 0 6 0 CAGTTTTTAACCTCCGACTCTAACACGGGTTTCCCGGGA 0 39 0 AACTGAGTGTCCCCCCGCTGGCAGAGGGGCACCCTCTGT 0 73 1 CCTCTGTATCATACGGCCCGGGTGACCGGTATTACGAGC 0 105 1 CGGCACTAAGGCCCCCGCCATAAACCTGGTATTCAAAAC 0 200 0 CATCTATATAACTGAGTCTAGGGCCTTGGGGAGTAATAT 1 36 0 GGATGGGAGGCTTCGGCCTTCTGGATTGGGACGCGGTGT 1 74 1 GCCCTCCAAGCCGCCGACACCTTACCCGGGACACCGCGT 1 104 0 TTGGATGTTCATGGCGGCGCGAGGAGCTGTATCTAGTTT 4 23 0 CAGGAAGTATCGCCAGCCCTCAGCCCTGGAGAGACTAAT 4 62 0 TAAGATTGTTCCTGAGCCACAGCCACCGGCTCCCCGTCA 5 23 0 ACTCTGGAGGCTTCGGGCGAGAGGAGGGGTATGATGTAG 5 114 0 ** * * * *** ** MAP Score: 3.65943 Motif 12 GGTGCCCCTCTGCCAGCGGGGGGACACTCAGTTT 0 72 0 TGAATACCAGGTTTATGGCGGGGGCCTTAGTGCC 0 204 1 TATAACTGAGTCTAGGGCCTTGGGGAGTAATATT 1 35 0 TATAGATGGATGGGAGGCTTCGGCCTTCTGGATT 1 67 1 GCGGTGTCCCGGGTAAGGTGTCGGCGGCTTGGAG 1 106 1 GGGTTCCATCGCTAGGGCTGTCGATTCTCTGAGG 1 163 1 ATACGGGAGTTTTGGAGGTGAGGATGAA 3 4 0 TGGATGTTCATGGCGGCGCGAGGAGCTGTATCTA 4 27 0 AATTAGTCTCTCCAGGGCTGAGGGCTGGCGATAC 4 61 1 CTCCTGATTCTACTGACGTGTGGTGAGACCCAGG 4 97 0 GTCAGTAGAATCAGGAGCTGTGGAAGTAATACCT 4 114 1 TGGAAGAAGATGACGGGGAGCCGGTGGCTGTGGC 5 13 1 GGGAGCCGGTGGCTGTGGCTCAGGAACAATCTTA 5 28 1 TCAGGAACAATCTTAGCACGTGGGTGAGCCAGCT 5 47 1 GAGGCTTCGGGCGAGAGGAGGGGTATGATGTAGA 5 113 0 CGGGCTCAACTCTGGAGGCTTCGGGCGAGAGGAG 5 127 0 AGTGTAGACAGGCTGACGGGCTCAACTCT 5 148 0 ** **** * *** MAP Score: 3.46834 Motif 13 TAGCGATGGAACCCTCTAGACTAGGCTTATAC 1 145 0 CATCGCTAGGGCTGTCGATTCTCTGAGGAACG 1 169 1 AGGGCTGAGGGCTGGCGATACTTCCTGGGTCT 4 74 1 CGCCCTTCTTCCAAGCTATACTCCTCCAAAAA 0 237 1 CCAGCAAACTACATTCTAGTCTAGTGTTTCTA 4 156 1 TCAGTTTTTAACCTCCGACTCTAACACGGGTT 0 47 0 AGCCCGTCAGCCTGTCTACACT 5 155 1 TTACTCCCCAAGGCCCTAGACTCAGTTATATA 1 39 1 TCAAGTAACACCCCTTTATACTATCTCCTCAA 4 269 0 TACTTCCACAGCTCCTGATTCTACTGACGTGT 4 110 0 AAACGTTTTGACACCATATACTAGCTTTCCTC 0 172 0 TGTTTAAAAGAGTTTTGATACTAAAAAATTTT 4 208 1 CAGCAGCACTTATTCTTAACGCCTAA 1 4 1 AGCCCTCAGCCCTGGAGAGACTAATTTGGATG 4 55 0 GAAATAGCTTAACATCTATACTTAGA 2 4 0 ** ******** MAP Score: 3.06171