AlignACE 3.0 10/20/99
AlignACE2 -i AP/AP_operons034_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234317
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	APE0706	300	565aa long hypothetical type II DNA topoisomerase VI subunit b

Motif 1
TTATGGTAGTCGTGAGGCGGGT        	0	2	0
TACCATAATATGTAGTGCAGGATTATTTTT	0	24	1
AATTAAGGAATGGGATGTAGTGGGGTAGCA	0	106	1
GCATGTACTATGGGAGGCTGCCCTGTTATG	0	175	1
GAGGCTGCCCTGTTATGTAGTCTAGCCTGC	0	188	1
CTCCCTAAGGCTTTATGCAGGCTAGACTAC	0	204	0
TATTATTTCTCTGGGGGTAGATTTGCCGCC	0	235	1
GAAACAGCCGCGCGAGGCGGCAAATCTACC	0	250	0
GCTGTTTCTGCGGGGGGTGGGCAGGTAGCT	0	272	1
          **********
MAP Score: 12.1441

Motif 2
TACATATTATGGTAGTCGTGAGGCGGGT         	0	1	0
TAGCCTGTACGCGTGTATTGCTGCAGCTTAACCTACA	0	65	0
TTAAGGAATGGGATGTAGTGGGGTAGCAGTATAACGC	0	108	1
AATTGTTCTAGCATGTACTATGGGAGGCTGCCCTGTT	0	165	1
ATCTCCCTAAGGCTTTATGCAGGCTAGACTACATAAC	0	199	0
TTATTTCTCTGGGGGTAGATTTGCCGCCTCGCGCGGC	0	237	1
GCCGCCTCGCGCGGCTGTTTCTGCGGGGGGTGGGCAG	0	259	1
CGGGGGGTGGGCAGGTAGCTTGAGTGCT         	0	282	1
          **  ***    *** **
MAP Score: 8.45783