AlignACE 3.0 10/20/99
AlignACE2 -i AP/AP_operons035_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234328
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	APE0510	53	352aa long hypothetical protein
#1	APE1958	199	246aa long hypothetical NH(3)-dependent NAD(+) synthetase

Motif 1
TTAGTGGGTTATACGTGTTCAGGCGGATGAGAAGGCT   	0	26	1
GAGTCTAAAGTAAGGATACGTGGCAGCCTTCTCTTTTACC	1	12	1
ATTGGAGTGTTGTAGAGCGGAGGCAGGTAAAAGAGAAGGC	1	37	0
CTCCAATTGGTGTGGGGGTTTGGCTGTTAATTATAAGGTT	1	70	1
ACATAGATTATAATGGTGTAAGACAGGCAATAACACAGTT	1	129	1
AGGAAATACCTTGAGGCCTCGGGCGCCTCAGGCTAT    	1	173	1
          *   * * *  *** * * *
MAP Score: 1.39022