AlignACE 3.0 10/20/99
AlignACE2 -i AP/AP_operons036_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234332
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	APE2213	168	163aa long hypothetical isoquinoline 1-oxidoreductase alpha subunit

Motif 1
TATTATTTAAACCGAAATCCTGTGCCAGCA	0	29	1
GTGCCAGCATATGCACAGCCTCCCTCATAT	0	50	1
AATAGTCAAAACGCAAATCCACACTCTATA	0	88	1
ACACTCTATAAAGCACATCCATATAGACAT	0	108	1
          **********
MAP Score: 5.39949

Motif 2
CGGGGGCGAACTATTATTTAAACCGAAATCCTGT	0	18	1
ATCCTGTGCCAGCATATGCACAGCCTCCCTCATA	0	45	1
ATATCACGTTTGAATAGTCAAAACGCAAATCCAC	0	76	1
ATAGTCAAAACGCAAATCCACACTCTATAAAGCA	0	89	1
AATCCACACTCTATAAAGCACATCCATATAGACA	0	103	1
        TTCCAAAAACTACACCTCCTCCACAC	0	152	0
          * ****  **** *
MAP Score: 0.983388