AlignACE 3.0 10/20/99
AlignACE2 -i AP/AP_sum_all039_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944236335
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	APE0510	53	352aa long hypothetical protein
#1	APE1958	199	246aa long hypothetical NH(3)-dependent NAD(+) synthetase

Motif 1
          CCTCCAACACTATACATTAGTGG	0	0	1
GCCTTCTCATCCGCCTGAACACGTATAACCCAC	0	29	0
GGATACGTGGCAGCCTTCTCTTTTACCTGCCTC	1	25	1
TCTCTTTTACCTGCCTCCGCTCTACAACACTCC	1	41	1
AACAGCCAAACCCCCACACCAATTGGAGTGTTG	1	65	0
          ****** * ** *
MAP Score: 1.35562

Motif 2
TTAGTGGGTTATACGTGTTCAGGCGGATGAGAAGGCT 	0	26	1
GAGTCTAAAGTAAGGATACGTGGCAGCCTTCTCTTTTA	1	12	1
ATTGGAGTGTTGTAGAGCGGAGGCAGGTAAAAGAGAAG	1	39	0
CTCCAATTGGTGTGGGGGTTTGGCTGTTAATTATAAGG	1	70	1
ACATAGATTATAATGGTGTAAGACAGGCAATAACACAG	1	129	1
          * * * *   **** * *
MAP Score: 1.05792