AlignACE 3.0 10/20/99
AlignACE2 -i AP/AP_sum_all056_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944236624
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	APE0525_APES022	116	APE0525: 186aa long hypothetical protein, APES022: 77aa long hypothetical small nuclear ribonucleoprotein
#1	APES023	29	62aa long hypothetical 50S ribosomal protein L37
#2	APE2281	24	256aa long hypothetical protein

Motif 1
TAGGCTTAATCCAAGGTGTAGAGTC        	0	2	0
TTGGATTAAGCCTAAGTAAAAGGGCTGTATTCC	0	21	1
GGGCTGTATTCCAAGCCTATAAGGCTATTGGGA	0	42	1
CTAGGCGTGATAAAGCGGTTGGGAGAGATCCCA	0	70	0
ATGATTGGATAGTAGGGTCTAGGCGTGATAAAG	0	88	0
       CGCCCTAGCTGTGGGGGTGTAGCGTA	1	3	1
TTATCTGCCTAGAAGCATTTAGG          	2	11	1
          ****** *  ***
MAP Score: 3.31715