AlignACE 3.0 10/20/99 AlignACE2 -i BB/BB_fusions001_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944236759 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 BB0851 300 B. burgdorferi predicted coding region BB0851 #1 BBK02 300 B. burgdorferi predicted coding region BBK02 #2 BBK03 193 B. burgdorferi predicted coding region BBK03 #3 BBK04 300 B. burgdorferi predicted coding region BBK04 #4 BBK28 137 B. burgdorferi predicted coding region BBK28 #5 BBK30 127 B. burgdorferi predicted coding region BBK30 Motif 1 TAGGATATAAAGAAGATTTAGAAAAAATCTTAAC 0 12 1 GTGTTTCTATAAAATAGATATGAATTGTGAGAAA 0 150 1 ATTTTTTATAAAAAGATATTGGTATTTTCTCACA 0 175 0 GTGCATTGAAAATAGATATAATAAACAATTTTTT 0 202 0 GGTATTTTAAAACAAATCTTCTAATCATAAAATC 0 243 0 ATTGACAAAGAAATGATTTTACAATGTCGGTATT 0 271 0 AATTTTTATCAAAACATGTTCTTAACTACAGAAA 1 90 1 TATGAGGAAAAGAACAGTTTGAAAACTTTGAATA 1 200 1 TGAAAGCCGTAAAATATCTAAAAAGATTCGGACC 1 274 0 AAATGTTATTAATAAAGCTAAAAAATATAATATT 2 23 1 CAACTCCGTAAATACATTTTCCAAGCAACATTCT 2 90 0 GTTTCAAAAAAATAAAGGTATTAATCCATAAACC 2 159 0 TTTATTCTGAAGAAGAGCTTAAAAACAAGAAAGT 3 182 1 TATTGCCTTTATAATAGGTAGCAACTTTGTTTAC 3 214 0 TTCGTACCGAAGAAGAGCTTGCAAACAAGAAAGT 4 105 1 TGATAAATATAGTTAAGTTTATAATTAGCAAATA 5 75 0 TTTCAAAATCAAAAAAGATTTAAAGAT 5 110 1 **** ** ** ** MAP Score: 19.4016 Motif 2 TTTATGATTAGAAGATTTGTTTTAAAATACCGACATT 0 246 1 TTTAGAACATGAATAATTATTTAATTACCAATATTAA 3 16 0 GCTATGAGGAAAAGAACAGTTTGAAAACTTTGAATAA 1 198 1 ATTTTTATCAAAACATGTTCTTAACTACAGAAAACTA 1 91 1 GATGCAAGATAAATATTGCCTTTATAATAGGTAGCAA 3 224 0 TATTTATTCTGAAGAAGAGCTTAAAAACAAGAAAGTA 3 180 1 ATTTTCCAAGCAACATTCTTTTAAGAACGGTCTTCCG 2 72 0 ATTTCAAAATCAAAAAAGATTTAAAGAT 5 109 1 ATGTTGCTTGGAAAATGTATTTACGGAGTTGATATTG 2 93 1 TATAATTAGCAAATATATGCTTTCTTAATGAACTAGA 5 53 0 CATTCGTACCGAAGAAGAGCTTGCAAACAAGAAAGTA 4 103 1 ATAGAAACACAATAATAATTTTTAGGAGATAAAGTGC 0 123 0 ATACTCAAAGGATGATTCTCTTTACTAAGTAGTTCTT 1 156 0 TATATTTGCTAATTATAAACTTAACTATATTTATCAA 5 73 1 TACCCAAATGAAAGAATATTTTATAGAAGAATTGCAA 0 59 1 TAGATATAATAAACAATTTTTTATAAAAAGATATTGG 0 187 0 TAGGCCCAATAAAGAATATTTTGATCTATAAAGGACT 3 69 0 TAAAGCTAAAAAATATAATATTCAAGACAGTATAAGC 2 35 1 TCCATGGGAGAAAACTAAGTTTGATGAATCTGAATTT 1 58 1 GACATTGACAAAGAAATGATTTTACAATGTCGGTATT 0 271 0 TCCAGATATTCAAGAAGGATTTGATATTGTAATTGGA 1 16 1 GATAGGATATAAAGAAGATTTAGAAAAAATCTTAACT 0 10 1 TAGGTTTATGGATTAATACCTTTATTTTTTTGAAACG 2 157 1 *** ** *** * * MAP Score: 17.9419 Motif 3 GATAGGATATAAAGAAGATTTAGAAA 0 6 1 TCAGTACCCAAATGAAAGAATATTTTATAG 0 55 1 AAGCAATACAAATGAAAGAACCATGATTAG 0 94 1 ACAATTTTTTATAAAAAGATATTGGTATTT 0 182 0 GAAAACTAAGCATAAAAGAACAAAATAAGA 1 120 1 AAAATAAGATAAAACAAGAACTACTTAGTA 1 141 1 CGTAAAATATCTAAAAAGATTCGGACCCCC 1 271 0 GAAGACCGTTCTTAAAAGAATGTTGCTTGG 2 74 1 GTGGCGTTTCAAAAAAATAAAGGTATTAAT 2 168 0 TAATATTGGTAATTAAATAATTATTCATGT 3 17 1 GTTCTAAATCCATAAAAGACATATAGTCCT 3 45 1 ATAATAGGCCCAATAAAGAATATTTTGATC 3 80 0 CTTCAGAATAAATAAAATAAGTTCCATTTT 3 164 0 GAAGAGCTTAAAAACAAGAAAGTAAACAAA 3 193 1 GAAGAGCTTGCAAACAAGAAAGTAAACAAA 4 116 1 ATTTCAAAATCAAAAAAGATTTAAAGAT 5 109 1 ********** MAP Score: 14.5416 Motif 4 GATAGGATATAAAGAAGATTTAGAAAAAAT 0 7 1 AAAGAAGATTTAGAAAAAATCTTAACTAAAGAT 0 20 1 TTCATTTGGGTACTGATCATCTTTAGTTAAGAT 0 38 0 CAGTACCCAAATGAAAGAATATTTTATAGAAGA 0 56 1 ACAATTTTTTATAAAAAGATATTGGTATTTTCT 0 179 0 AAATAGATATAATAAACAATTTTTTATAAAAAG 0 194 0 GTCGGTATTTTAAAACAAATCTTCTAATCATAA 0 247 0 GACATTGACAAAGAAATGATTTTACAATGTCGG 0 275 0 CTGAATTTTTATCAAAACATGTTCTTAACTACA 1 87 1 CGCTATGAGGAAAAGAACAGTTTGAAAACTTTG 1 197 1 TAGGTTGGTGTTCAGAGAATTTTCTAGTGGGGG 1 241 1 GCCGTAAAATATCTAAAAAGATTCGGACCCCCC 1 270 0 ATAAAGCTAAAAAATATAATATTCAAGACAGTA 2 34 1 AAGACCGTTCTTAAAAGAATGTTGCTTGGAAAA 2 75 1 ATAATTATTTAATTACCAATATTAAGCTAAA 3 8 0 TAATAGGCCCAATAAAGAATATTTTGATCTATA 3 76 0 TAATCAGTTTAATTGAAAATATT 5 0 0 GATATTGCAGATATAATCAGTTTAATTGAAAAT 5 13 0 CAATTTCAAAATCAAAAAAGATTTAAAGAT 5 107 1 ** *** *** ** MAP Score: 13.6479 Motif 5 GATAGGATATAAAGAAGATTTAGAAAAAATC 0 8 1 CAATTCTTCTATAAAATATTCTTTCATTTGGGT 0 60 0 TCTATTTTATAGAAACACAATAATAATTTTTAG 0 135 0 TTGTGTTTCTATAAAATAGATATGAATTGTGAG 0 148 1 AATAGATATAATAAACAATTTTTTATAAAAAGA 0 193 0 TACAGTGCATTGAAAATAGATATAATAAACAAT 0 207 0 ACATTGACAAAGAAATGATTTTACAATGTCGGT 0 274 0 TATGGAGTATAGAAATGTTATTAATAAAGCTAA 2 11 1 ATTAATAAAGCTAAAAAATATAATATTCAAGAC 2 30 1 GTATTAATCCATAAACCTAACATTGCGATTTGT 2 143 0 TTTCAAAAAAATAAAGGTATTAATCCATAAACC 2 159 0 TTCTAAATCCATAAAAGACATATAGTCCTTTAT 3 46 1 AATAGGCCCAATAAAGAATATTTTGATCTATAA 3 75 0 CTTCTTCAGAATAAATAAAATAAGTTCCATTTT 3 164 0 CTTAAAAACAAGAAAGTAAACAAAGTTGCTACC 3 199 1 GCTACCTATTATAAAGGCAATATTTATCTTGCA 3 226 1 CTTGCAAACAAGAAAGTAAACAAAG 4 122 1 TAGTTCATTAAGAAAGCATATATTTGCTAATTA 5 55 1 TTTGCTAATTATAAACTTAACTATATTTATCAA 5 77 1 ***** * **** MAP Score: 13.2902 Motif 6 TAGCACTTTATCTCCTAAAAATTATTATTGTGTTTCTATAAAATA 0 121 1 ATATTGGTATTTTCTCACAATTCATATCTATTTTATAGAAACACA 0 149 0 CAATATCTTTTTATAAAAAATTGTTTATTATATCTATTTTCAATG 0 188 1 TATTTGATTTTATGATTAGAAGATTTGTTTTAAAATACCGACATT 0 238 1 AGTTTCCAGATATTCAAGAAGGATTTGATATTGTAATTGGAAATC 1 12 1 AAAACTAAGTTTGATGAATCTGAATTTTTATCAAAACATGTTCTT 1 68 1 CGTAAATACATTTTCCAAGCAACATTCTTTTAAGAACGGTCTTCC 2 73 0 GTTAGGTTTATGGATTAATACCTTTATTTTTTTGAAACGCCACTA 2 155 1 TTAATATTGGTAATTAAATAATTATTCATGTTCTAAATCCATAAA 3 16 1 AATATTTTGATCTATAAAGGACTATATGTCTTTTATGGATTTAGA 3 47 0 ATGCGGTGAATAGTAGTAAACCAATATCTATCCTAGTGTATTATG 3 114 0 TTGCTACCTATTATAAAGGCAATATTTATCTTGCATCTAGATCTC 3 224 1 TCTTAGGCCATATTCAAGTAGCGTTTCGTATAATTCTCCAAAACT 4 11 0 TTCATCGTATTATTTAAGACGGGATTTATCTCATTCGTACCGAAG 4 72 1 AATATTTTCAATTAAACTGATTATATCTGCAATATCACTAAA 5 7 1 AAATTCTAGTTCATTAAGAAAGCATATATTTGCTAATTATAAACT 5 49 1 GATTTTGAAATTGATAAATATAGTTAAGTTTATAATTAGCAAATA 5 75 0 ATCTTTAAATCTTTTTTGATTTTGAAATTGATAAAT 5 101 0 * ** * *** * * * MAP Score: 12.3097 Motif 7 GATAGGATATAAAGAAGATTTAGAAAAAATCTTAA 0 10 1 TACCCAAATGAAAGAATATTTTATAGAAGAATTGC 0 59 1 AATTTTTTATAAAAAGATATTGGTATTTTCTCACA 0 175 0 TCTTTTTATAAAAAATTGTTTATTATATCTATTTT 0 193 1 TTATGATTAGAAGATTTGTTTTAAAATACCGACAT 0 247 1 GACATTGACAAAGAAATGATTTTACAATGTCGGTA 0 273 0 CCAGATATTCAAGAAGGATTTGATATTGTAATTGG 1 17 1 AAGATAAAACAAGAACTACTTAGTAAAGAGAATCA 1 146 1 GCTATGAGGAAAAGAACAGTTTGAAAACTTTGAAT 1 198 1 ATTTATTCTGAAGAAGAGCTTAAAAACAAGAAAGT 3 181 1 GGCCATATTCAAGTAGCGTTTCGTATAATTCTCCA 4 16 0 ATTCGTACCGAAGAAGAGCTTGCAAACAAGAAAGT 4 104 1 ATTTCAAAATCAAAAAAGATTTAAAGAT 5 109 1 ***** * ** ** MAP Score: 6.20292 Motif 8 TTTAGATATTTTACGGCTTTCAAT 1 286 1 ATATGGAGTATAGAAATGTT 2 0 1 AAGAACGGTCTTCCGGCTTATACTGTCTTG 2 57 0 GAAAATGTATTTACGGAGTTGATATTGATC 2 103 1 AATGTTAGGTTTATGGATTAATACCTTTAT 2 152 1 TATATGTCTTTTATGGATTTAGAACATGAA 3 40 0 TCCTAGTGTATTATGGCCTATAATAGGCCC 3 99 0 CGCTACTTGAATATGGCCTAAGAATTGCAG 4 33 1 ********** MAP Score: 4.15939 Motif 9 ATAGGATATAAAGAAGATTTAGAAAAAATCTTAACTA 0 11 1 ACCCAAATGAAAGAATATTTTATAGAAGAATTGCAAG 0 60 1 TTCTTAACTACAGAAAACTAAGCATAAAAGAACAAAA 1 108 1 AGCATAAAAGAACAAAATAAGATAAAACAAGAACTAC 1 128 1 CTATGAGGAAAAGAACAGTTTGAAAACTTTGAATAAT 1 199 1 AATAAAGCTAAAAAATATAATATTCAAGACAGTATAA 2 33 1 AGCTCTTCTTCAGAATAAATAAAATAAGTTCCATTTT 3 164 0 AGAGCTTAAAAACAAGAAAGTAAACAAAGTTGCTACC 3 195 1 ATTCGTACCGAAGAAGAGCTTGCAAACAAGAAAGTAA 4 104 1 ***** * * * ** MAP Score: 2.9696 Motif 10 ATAGGATATAAAGAAGATTTAGAAAAAATC 0 11 1 ATCTTAACTAAAGATGATCAGTACCCAAAT 0 38 1 GAATATTTTATAGAAGAATTGCAAGCAATA 0 72 1 ATTTTATGATTAGAAGATTTGTTTTAAAAT 0 244 1 CCAGATATTCAAGAAGGATTTGATATTGTA 1 17 1 AATAAGATAAAACAAGAACTACTTAGTAAA 1 143 1 GCGCTATGAGGAAAAGAACAGTTTGAAAAC 1 196 1 ATTTATTCTGAAGAAGAGCTTAAAAACAAG 3 181 1 ATTCGTACCGAAGAAGAGCTTGCAAACAAG 4 104 1 TTCAAAATCAAAAAAGATTTAAAGAT 5 111 1 ********** MAP Score: 2.40891