AlignACE 3.0 10/20/99
AlignACE2 -i BB/BB_fusions005_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944236945
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	BB0217	300	phosphate ABC transporter, permease protein (pstA)
#1	BB0332	123	oligopeptide ABC transporter, permease protein (oppB-1)
#2	BB0642	78	spermidine/putrescine ABC transporter, ATP-binding protein (potA)
#3	BB0643	154	conserved hypothetical protein
#4	BBJ23	300	B. burgdorferi predicted coding region BBJ23
#5	BBJ24	58	B. burgdorferi predicted coding region BBJ24
#6	BBJ25	31	B. burgdorferi predicted coding region BBJ25
#7	BBJ26	58	ABC transporter, ATP-binding protein

Motif 1
TCACAACATATATAATAATAAAATTTCACACT	0	18	1
AAGCTATTCTAAAAACACTAATCAAAAACAAT	0	119	1
CTGTAGGCTATTTAACAAAAAAAGAATTTGAA	0	227	1
AATATTGGGATATAATTTAAAATCTAGGGATT	0	257	0
TATTAAGGCTTTAAAAATAAAAACT       	0	285	1
          TATAATACAAAAAACCTCCTAT	1	0	1
CTATAGCTTGAAAAACAATAAAGACTATATGA	1	50	1
AGGCATTTACATAAATAATAATATTAAGTATA	2	13	1
AAATAATAATATTAAGTATAATCTTGATTTGT	2	25	1
TTATGGCTGTATTAATACAAATCAAGATTATA	2	41	0
TTATTTTCTTAAAAAATATAAAAACTTAAATA	3	24	1
TTTTTTAAATAAAAAATATAATCTGTATTTAA	3	49	0
ATATTTTTTATTTAAAAAAAAACAATTCTTTT	3	62	1
GAAAACTAACATAAACTAAAAACAAAAACAAT	3	97	1
AAGAAGAAACTAAAAAATCAATTATTTATTCA	4	13	0
AATTTTTCTTATAAAGAAGAAACTAAAAAATC	4	26	0
TTACTGATTAATAAATATTAATTTTTCTTATA	4	45	0
TTATTGAATTTTAAAAATTAAAAACATTTGCT	4	80	1
TAAACTTTATTTAAACTTTAAAGAGAATATTT	4	115	0
TAAAGTTTAAATAAAGTTTAAATGTTGAATTA	4	127	1
AACCATACTTTTAAAAAACAAACGGTCTATCA	4	167	0
TAATAAAAAAAATAAATTCAATACTGTACACT	4	235	0
TTTTTGAAAAAATAATAAAAAAAATAAATTCA	4	247	0
ATTTTTTCAAAAAAATTAGAATTTATTAAGTA	4	266	1
TTCATTGAAATTAAATTCTAAATAATTTT   	6	7	0
AATTCAACCATAAAATTTAAAAAGCTTTACCA	7	18	0
          ***** ** ***
MAP Score: 33.5306