AlignACE 3.0 10/20/99
AlignACE2 -i BB/BB_operons021_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944237664
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	BB0147	50	flagellar filament 41 kDa core protein (flaB)
#1	BB0180	83	flagellar protein, putative {Borrelia burgdorferi
#2	BB0359	64	carboxyl-terminal protease (ctp)

Motif 1
CAAAGTCAGAAATTTAAATTTTATCATGGAGGAATG	0	20	1
          ACTTTAATGTATTATAACACAATAAA	1	0	1
TTTACAAATCAATTTTGTCTTTTTTATTGTGTTATA	1	22	0
TATGAAATTAATTATAAGCTATTATAAACATATTTA	1	54	0
         AGTTTTAAAATATTATATTATGGAAAT	2	1	1
AATAAAATCAAGTTTTAATTTTTGCATTAGGAATGA	2	34	1
          * *** *  * ** **
MAP Score: 7.15141