AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions003_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944240256 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 natA 143 Na+ ABC transporter (ATP-binding protein) #1 yckB 300 similar to amino acid ABC transporter (binding protein) #2 yckK 114 similar to glutamine ABC transporter (glutamine-binding protein) #3 yfmD 71 similar to ferrichrome ABC transporter (permease) #4 yfmC 108 similar to ferrichrome ABC transporter (binding protein) #5 ykoF 300 ykoF #6 yqiY 80 similar to amino acid ABC transporter (permease) #7 yqiX 268 similar to amino acid ABC transporter (binding protein) #8 yqgH 68 alternate gene name: yzmC; similar to phosphate ABC transporter (permease) #9 yqgG 153 alternate gene name: yzmB; similar to phosphate ABC transporter (binding protein) #10 glnQ 155 glutamine ABC transporter (ATP-binding protein) #11 glnH 21 glutamine ABC transporter (glutamine-binding protein) #12 glnM 60 glutamine ABC transporter (integral membrane protein) #13 ytmM 29 similar to amino acid ABC transporter (permease) #14 ytmL 21 similar to amino acid ABC transporter (permease) #15 ytmI 152 similar to hypothetical proteins from B. subtilis #16 ytlA 150 ytlA #17 yufN 300 similar to ABC transporter (lipoprotein) #18 yufO 75 similar to ABC transporter (ATP-binding protein) #19 yusV 217 similar to iron(III) dicitrate transport permease #20 opuCA 263 glycine betaine/carnitine/choline ABC transporter (ATP-binding protein) #21 rbsR 300 transcriptional regulator (LacI family) #22 yxeN 22 similar to amino acid ABC transporter (permease) #23 yxeM 24 similar to amino acid ABC transporter (binding protein) #24 yxeK 185 similar to monooxygenase #25 yxdL 143 similar to ABC transporter (ATP-binding protein) Motif 1 AAGCATATAGAAAAAAGGAGGCGGCTGTT 16 8 0 ACTTGATGCGAAATAAGGAGGTTGTCTAT 16 131 1 ACGGTTACATAAACAAGGAGGAGCTGTT 21 282 1 ACTAAATCTGAAAAAAGGAAGAATGAC 4 91 1 TTAATGATGAAAAACAGGAGGGAGCACA 15 7 0 TTTTACCAAAAAAACAGGAGGTCGGAGAA 5 281 1 TAAAAACATGATAAAAGGAGTATCGCC 24 168 1 AAATAGAAAAGGCGGGAAAATCAA 23 4 1 TCTTAATAAAAAGAGGAGTGCGGGGA 8 5 1 CTAGAAATAAAGATAAGGGAGATTGTGAC 0 124 1 ATAGCATTGAACATAAGGGGTTGCAATATGT 1 244 0 AGAGGTGATGAAAAAAGGAATTGTCCAAGGA 1 138 0 AAGAATAAAACCATAAGGAGGATTTTC 25 126 1 GAATCGCAGGGATAAGGAGGTCGAGCCCTT 18 9 1 TTTTCCTGTAAGAAAAGGAGACAAAGGCT 6 61 1 AGACTTTGTCAAAAAAAGAGTGAAAACCTTA 21 159 1 GCTATTTTCAACACCAGGAAGAAATATGATA 20 50 0 AACAGAAATGGGGGAGCTTGT 11 3 1 AATAAAAGAAAAACAAGGGATAAGGGCTCGA 18 30 0 AAAATCAACCAGAAAAGTGGGGAATAAG 2 96 1 TATCAAGGGGAAACAAAGCGGGCTATGTTGT 25 25 0 TTTTATTTTGAAATAAAGGAGCGGTCAATCA 18 54 1 * ********* MAP Score: 22.4498 Motif 2 CGAAGAGTTCTTTTTATGTCGTGAAATGGGATAGAA 0 43 0 TAGGAAACTTTTTTCCTGTAAGAAAAGGAGACAAAG 6 51 1 GCAGCCCGGGTTTTTTTGTGCATAAATTTCCAAGGA 7 34 1 AATCAGTGCGTTTTTTTGTATAAAAAAAACGCCCAC 9 28 0 GATATGCAGTTTTTTATTTTACCAAAAAAACAGGAG 5 265 1 ATTTTTTCACTTTTAATTTTCAGAAAAGTTTGATCA 10 91 1 GTAAGCTAATTTTTTATTTCAATAAAATCAACCAGA 2 73 1 AAAAAAATGATTTCGTTGTTTACAAAATGATTCTTA 5 29 1 ATGTCAATATTTTTTTAGTAAAGAAAGCTGCGTTT 4 9 0 CCGGATGTAATTTTGGAGTAAGGAAAGCATATAGAA 16 27 0 AGGTTTACTTTTTTTGATTAGTCAAAGATCAGAGTA 15 52 1 CCAATCCGATTTTTCGTTTATTCAAGATATAACCCC 17 272 0 CATTGTAAACTTTTTATTTTACAAAGTTCAAACTAT 20 183 1 ATAATAAGGATTATACTTTTCAGAAAATTTAAAGGA 20 217 1 ACTTCAGTAATTTTAATGATGAAAAACAGGAGGGAG 15 14 0 AGGAAAAAAGTTTCCTATTCAATAAAAAGGCTCAAC 6 32 0 CAAAGGTACATTTTGATTTATTCATATTAAACGACT 24 96 1 TATTCATTACTTTTGGTGTATTTGAATATTTATTCG 7 227 0 AATAAAAAGTTTACAATGTGTTGAAATTATATGTTA 20 165 0 CTTGTTTTTCTTTTATTTTGAAATAAAGGAGCGGTC 18 44 1 GTTTGATCATTTACTTTTTGGTCAAATTTTCTGATA 10 118 1 AACCTTAAATTTTTCAATTATATATACAATTTACAA 21 183 1 TTATCATCTATTATGATGTTAAAATAAAAAATTGTA 5 62 1 AAGATTTTGTCTTATGAAAACCAAATACTT 2 4 1 **** *** *** MAP Score: 22.2664 Motif 3 TCACAATCTCCCTTATCTTTATTTCTAGTAATGA 0 118 0 GACGGGTCTGCTGCATCCTTCACTTTCACATGCG 1 80 1 TTTTTCATCACCTCTTCCCTTCATAGACGCTTTT 1 154 1 CAAGGATTCCCCTCGCTTCTCATTTGTC 3 4 0 GGGAATCCTTGCTTCTTCGTTTTTGCAACCAGAC 3 27 1 CCTCTCCCGTCCCTATATGAAAAA 5 0 1 TCCATTTCCCCCGTATTCATTACTTTTGGTGTAT 7 242 0 ACGGTTGTCCCCGCACTCCTCTTTTTATTAAGA 8 9 0 CTGCTTTCACCTCACCTATATCTTTTGAGGTTT 10 9 1 ACAAGCTCCCCCATTTCTGTT 11 3 0 AGCAGGCGATGCTCATCCCAATTTGATAAGGAGT 12 26 1 TGTGCTCCCTCCTGTTTTTCATCATTA 15 3 1 AACAGCCGCCTCCTTTTTTCTATATGCTT 16 5 1 GGAACGCCTTCCGCATCCTTCTCTTCCCCGCCTT 17 80 1 GAGGTCGAGCCCTTATCCCTTGTTTTTCTTTTAT 18 26 1 TGATTGACCGCTCCTTTATTTCAAAATAAAA 18 54 0 TTCAAGAAATCTTCATCCATATTTGTGAAGACTT 21 131 1 AACAGCTCCTCCTTGTTTATGTAACCGT 21 282 0 **** *** * ** MAP Score: 15.3095 Motif 4 ATCAATGCCGTTCCCTCATGGTCACGC 24 7 1 GCGGGGACAACCGTTTCTCCTCTTAACACA 8 29 1 CACTGCTCCCTCTCTTTTTAC 14 9 0 CGGATACCTCCCACTTCCTCTGCATTCAGC 20 79 0 GATCCATTTCCCCCGTATTCATT 7 255 0 CGGTCAACCTGCACTTCCCCACGCTGGTAT 5 182 0 TGATTGACCGCTCCTTTATTTCAAAAT 18 58 0 AACCGCTCCTTTTTGCTGGCTT 19 205 0 TGTGCTCCCTCCTGTTTTTCA 15 1 1 AACAGCTCCTCCTTGTTTATGT 21 288 0 ATAGTCTTTTCTGTTTCTCCCCATTTACAG 21 54 1 TCTTCTCCCCCCTCATCCGAA 13 18 0 TCCGCATCCTTCTCTTCCCCGCCTTTCGAA 17 89 1 GGATCAAAGCGCGTTTCTTCCGCGCTTTAT 5 132 0 TTTTTCATCACCTCTTCCCTTCATAGACGC 1 154 1 ATAGCCCGCTTTGTTTCCCCTTGATAACAT 25 30 1 TGCCTCTTGACCATTTCTTCCGGTATTGGC 1 40 1 GGTTGTCCCCGCACTCCTCTTTTTATTAAG 8 11 0 ACTTTCACATGCGTTTCCTTGGTACGTCTG 1 101 1 TATCATTCCCCTAGTTACATAG 0 2 1 TTTTGTCACTCCTCTTCACAAAATA 15 137 0 CTATAGTTCCCCCAATCTGTTAA 1 287 0 AGGGGAATCCTTGCTTCTTCGTTTTTGCAA 3 25 1 CAGTCTCACTTCCTTACTGCGTCTG 3 56 0 TTCCTGAATTCCCCCTGCGTATAAT 9 138 0 ********** MAP Score: 15.2324 Motif 5 TCCAACTAATCCAGCTTTTCGTATATAGTCATTA 0 90 1 AACACCCACCCATGCTTTTTGTATACACAATTCG 1 189 1 ATGTTCAATGCTATCTTTTTAGTTGATTAACAGA 1 261 1 GATTTGTAAGCTAATTTTTTATTTCAATAAAATC 2 68 1 CTTATTCCCCACTTTTCTGGTTGATTTTATT 2 93 0 GTCATTCTTCCTTTTTTCAGATTTAGTAATGA 4 86 0 ACAACGAAATCATTTTTTTCATATAGGGACGGGA 5 14 0 TTTCCGTATACAATTTTTTATTTTAACATCATAA 5 72 0 TTAGGATATGCAGTTTTTTATTTTACCAAAAAAA 5 261 1 TCTCCGACCTCCTGTTTTTTTGGTAAAATAAAAA 5 275 0 AAAAAGCGGCTCAACTTTTTCGTTGAGCCTTTTT 6 11 1 TCAAAGCAGCCCGGGTTTTTTTGTGCATAAATTT 7 29 1 TAAACAGTTTCTCATTTTTATGCAATACTATTTT 7 180 0 TCCCCGCACTCCTCTTTTTATTAAGA 8 2 0 AGTAAATGATCAAACTTTTCTGAAAATTAAAAGT 10 99 0 TACTTTTTGGTCAAATTTTCTGATAGGAGGATTG 10 129 1 TGTGCTCCCTCCTGTTTTTCATCATTAAAATTAC 15 10 1 AAGTGAAGGTTTACTTTTTTTGATTAGTCAAAGA 15 46 1 ATTTGTTTACTAAGCTTTTATTGTTTATACTATA 15 93 0 AACAGCCGCCTCCTTTTTTCTATATGCTTTCCT 16 9 1 ATCAAGTTAATATCCTTTTTTGCTTTACATATCG 16 104 0 GACTTATGACTTAGTTTTTCGGGATCAACTAACC 17 12 0 AAAACCGTGACATCGTTTTCTGAAGTAAGACTTA 17 40 0 AGCTTTGAACCAAATTTTTCTGGGGGGTTATATC 17 249 1 CGCCAATCCGATTTTTCGTTTATTCAAGATA 17 279 0 AGCCCTTATCCCTTGTTTTTCTTTTATTTTGAAA 18 33 1 TTTTCAAAGTCAGTGTTTTCTGCTACAATGAGGG 19 67 1 CTCCTTTTTGCTGGCTTTTTAGCAGCACTATGTA 19 188 0 ATTGTAAGAACACCCTTTCCGTCTCGGTCATAAC 20 114 1 TAATAAGGATTATACTTTTCAGAAAATTTAAAGG 20 218 1 TCTGGGATGATAGTCTTTTCTGTTTCTCCCCATT 21 45 1 TTAAGGTTTTCACTCTTTTTTTGACAAAGTCTTC 21 157 0 TTGATTTTCCCGCCTTTTCTATTT 23 1 0 TGAGTTAAGATTAATTTTTTCTATTCAAGCGAAA 24 45 0 ** ****** * * MAP Score: 11.5956 Motif 6 TTTCATCACCTCTTCCCTTCATAGACGCTTTTA 1 156 1 AAACGCGCTTTGATCCCTTATGACCCGATCTGG 5 146 1 TATGACTGCATATTCCCTTAGGATATGCAGTTT 5 244 1 TCCGATTGAATAATCCCTTAATATTTATTCATA 7 72 0 ATCTTTCCAGTGATCTCTTCTGATATTACTAGA 7 127 0 GACAACCGTTTCTCCTCTTAACACATTCATAGG 8 34 1 ACATAAAGAATAATTCCTTGTAAACCTCAAAAG 10 31 0 CTGCCTATTCACTCCTTATCAAATTGGGATG 12 39 0 GTGGTGTGAGTATTTCCTTCGAAAGGCGGGGAA 17 103 0 ACAGTTCTATTCTTCCCTGAATAAGCGTGGTGT 17 129 0 CTCGACCTCCTTATCCCTGCGATTC 18 2 0 GGTCGAGCCCTTATCCCTTGTTTTTCTTTTATT 18 28 1 AGCTGATCATCCCTTCAAATGGCAATTGA 20 6 1 GCCCGCTTTGTTTCCCCTTGATAACATGGATTT 25 33 1 * ******** * MAP Score: 8.11951 Motif 7 CTTTATTCTATCCCATTTCACGACATAAAAA 0 38 1 CTTTTTTCATCACCTCTTCCCTTCATAGACG 1 152 1 CTTATTCCCCACTTTTCTGGTTGATTT 2 97 0 CAAGGATTCCCCTCGCTTCTCATTTGTC 3 7 0 TTCGGTCAACCTGCACTTCCCCACGCTGGTA 5 183 0 CGATCTATGACTGCATATTCCCTTAGGATAT 5 239 1 AAATAAAAAACTGCATATCCTAAGGGAATAT 5 253 0 GATCCATTTCCCCCGTATTCAT 7 256 0 TGTCCCCGCACTCCTCTTTTTATTAAGA 8 7 0 ACAAGCTCCCCCATTTCTGTT 11 2 0 TGAGCATCGCCTGCTCATCCCGGGATGGTTG 12 10 0 TCTTCTCCCCCCTCATCCGAAGAAATATA 13 10 0 TTTTGTCACTCCTCTTCACAAAATATATA 15 133 0 AACAGCCGCCTCCTTTTTTCTATATGCTTT 16 9 1 ATAGACAACCTCCTTATTTCGCATCAAGTT 16 130 0 CTTCCGCATCCTTCTCTTCCCCGCCTTTCGA 17 87 1 AGAACTGTCTCAGCGCATTCCATTTGTTATT 17 154 1 AGGGCTCGACCTCCTTATCCCTGCGATTC 18 8 0 AACCGCTCCTTTTTGCTGGCTTTTTA 19 201 0 TCCGGATACCTCCCACTTCCTCTGCATTCAG 20 80 0 ATTGTAAGAACACCCTTTCCGTCTCGGTCAT 20 114 1 TTGATTTTCCCGCCTTTTCTATTT 23 4 0 **** ****** MAP Score: 7.5079 Motif 8 AGACGAACAACCCGGATGCTCAAAGCA 7 5 1 GGATGCTCAAAGCAGCCCGGGTTTTTTTGTGC 7 23 1 CAACCATCCCGGGATGAGCAGGCG 12 2 1 TGTCACGGTTTTCCGCCCGGAACGCCTTCCGC 17 62 1 TTCAAGATATAACCCCCCAGAAAAATTTGGTT 17 256 0 AGAAAAGACTATCATCCCAGAAAATGTTTAAT 21 34 0 TTTTATGTTGAACGTCCCGGCACTACATGAAA 25 79 1 ACTACATGAAAGCAGCCCAGATCAACAAGAAT 25 100 1 * ** ******* MAP Score: 5.8331