AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions006_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944240552 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ybbF 25 similar to sucrose phosphotransferase enzyme II #1 ybbI 170 similar to hypothetical proteins #2 ybfT 218 similar to glucosamine-6-phosphate isomerase #3 gutB 201 sorbitol dehydrogenase #4 ydjD 73 similar to H+-symporter #5 yflF 171 similar to phosphotransferase system enzyme II #6 treP 192 phosphotransferase system (PTS) trehalose-specific enzyme IIBC component #7 glvA 300 6-phospho-alpha-glucosidase #8 yfiA 64 similar to hypothetical proteins #9 yjmA 197 similar to glucuronate isomerase #10 yjmB 67 similar to Na+:galactoside symporter #11 ptsG 238 phosphotransferase system (PTS) glucose-specific enzyme IIABC component #12 ynaJ 300 similar to H+-symporter #13 ypqE 137 similar to phosphotransferase system enzyme II #14 sacP 300 phosphotransferase system (PTS) sucrose-specific enzyme IIBC component #15 sacX 300 negative regulatory protein of SacY #16 bglP 300 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIABC component #17 yyzE 300 similar to phosphotransferase systeme enzyme II Motif 1 ATTTGATACAAAAAAAGCTGGTGAAAGGCGG 16 235 1 TCAATCATGAAAGAAAGCAGGAAAAGAC 14 7 0 ATTATTTAAAAAGAAAGCGGGAATGACAG 5 8 0 TAATCTGGTTAAAAAAGGCGGTGGCGATA 13 8 0 AATATGACATTAAAAAGCAGGGTGAGCCTCT 6 10 0 TTTTGTTTAAATAAAAGGGGGAGAAATAG 14 281 1 TGATTGAGGGAAAAAAACGGGAAGTTCATTC 11 66 1 AAAATTTGTTATAAAAGAAGGATACAAATCT 2 85 0 AGTCCCCCCATAAAAAGGAGGTATACAC 16 282 1 GGACTGCTGGATGAAAGGTGGCCGCCTTTCA 16 256 0 TTGAAATAGAATGAAAGACGGTGAGGAC 9 179 1 AGGTATGACGAAAAAAGATGAATTTTTTGCT 12 151 1 GGTATATTTGAAAAAAAAGGGTATGAGGGGG 5 144 1 TTCATATACAAAAAACGCTGGATTGATAAAA 3 35 0 TTGAACGTGTTAAAAAGCAGATAAAATGGGG 3 114 1 TATTAATGCCTAAAAAACAGGGCATTTTAAC 15 94 1 ATATCATTTTAAAACAGGGGGCATCCTC 1 152 1 TATACAAGTTATAAAAACGGATACGGAGGGG 6 166 1 GTCAGACTAGTAAAAAGAGGAGGTCAATTCT 11 216 1 TTTACTGGAAATGAAAACGGATTCTTGGGGT 4 44 1 TGTCATAAACATAAAAAAAGACATTGCCAGA 9 59 0 ATTTGCGTAAATGAAAAAGGATCGCTGTGTC 14 222 1 CATTTCCAGTAAACAAGAGGGAGAATACGAA 4 26 0 AAACAGTGCAAAAAAATATGGTGATCAGCAA 12 181 0 ******** ** MAP Score: 25.0886 Motif 2 AAACAAAAATGTATGCACTTACATTTTATTTTCT 3 158 1 CCCACCCCAAGAATCCGTTTTCATTTCCAGTAAA 4 44 0 AACACTTTTTTATAGCGCTTTCATCCTAGTCTGG 6 89 0 CAACCCCTCCGTATCCGTTTTTATAACTTGTATA 6 166 0 CGACCTCCTTGATAACGTTTACAATTCCATTTAT 7 272 0 AAAATGAAATGTTAACGCTGTCATAAACATAAAA 9 74 0 ATTTCAAAATGTTAACGTTAACATTTTGATTTGT 9 152 0 GTCTTCCAGTTTAACCGTTTACATTTGCCCTTTT 11 142 0 TTACGCCTGTGAATTCGTTGTCATGATTTTTAGC 11 176 1 GCACTGTTTTGAAAGCGCTTTTATAAAAGTTTAC 12 203 1 AATAGTTGACGAAAACGCTATCATGATTTATGAT 14 127 1 TTCAGATTAAGAATACGCTTTCATCATAAATCAT 14 149 0 TTCGTGAGATGTCAACGCTTTCATTTTTGGTGTT 16 47 0 TAGCATAAACCGCTTACAATGATAGTTAG 17 5 1 CCTTCGTTTTGGTTACGCTTTCATTATAATTGTA 17 79 0 * * **** **** MAP Score: 23.9844 Motif 3 GGTATATTTGAAAAAAAAGGGTATGAGGGGG 5 144 1 ATTAATGCCTAAAAAACAGGGCATTTTAACT 15 95 1 ATATGACATTAAAAAGCAGGGTGAGCCTCT 6 9 0 ATATCATTTTAAAACAGGGGGCATCCTC 1 152 1 TAATCTGGTTAAAAAAGGCGGTGGCGATA 13 8 0 TTTTTGTTTAAATAAAAGGGGGAGAAATAG 14 280 1 GTGATTGAGGGAAAAAAACGGGAAGTTCATT 11 65 1 GATTATTTAAAAAGAAAGCGGGAATGACAG 5 9 0 AAGCGTAACCAAAACGAAGGGGTGGGTGAAA 17 93 1 GGTCTCAATGAAAAAGAACGGATTGCATACA 2 26 0 GGTTGAAGTGAATGAGAAGGGAGAAAATACA 13 116 1 TTACAGATTCGAAAATGGGGGAATTTCAT 8 8 0 ATAATAGAAAGAAAATGGGGGGATCTGAT 8 45 1 TTGACAGTTTGATAAGGGCGGTGCTAAATTC 2 128 1 TTAAAAATAGGAAACACACGGACCTGGGAAA 5 64 1 GGCATCTTGAAGGGGAGGGGTTTTA 0 8 1 TATAAAAACGGATACGGAGGGGTTGGC 6 175 1 TTAAAGGATCGAAAAGGGGAGAAATC 12 284 1 AAAGGACGGCGAAGAATCGGGCCGCTTGGAG 1 11 1 AAGACCCAATGATGCAAAGGGAGTATTAATG 15 71 1 TCAGACTAGTAAAAAGAGGAGGTCAATTCTT 11 217 1 CATTTCCAGTAAACAAGAGGGAGAATACGAA 4 26 0 GTTTACTGGAAATGAAAACGGATTCTTGGGG 4 43 1 AGCCCAACACGAAAAGAAGAGTTAAAATGCC 15 114 0 CGGATTGCATACAGAATGGGGAGAATGAA 2 8 0 TAAAAAGCAGATAAAATGGGGGCAGTAACAG 3 124 1 TACTAATATGGATGGAAGGGGGATAAGAGGG 12 52 1 ****** **** MAP Score: 20.7414 Motif 4 GAGGATGCCCCCTGTTTTAAAATGATATAT 1 150 0 TTCATTCTCCCCATTCTGTATGCAATCCGTT 2 8 1 GATAGACAAGCACCATATTTGTTATGACCAATT 2 177 0 AAGCCTGCACCTCCTATTAGTACTATTTTATC 3 9 1 CTGTTACTGCCCCCATTTTATCTGCTTTTTAAC 3 122 0 TCTTCGTATTCTCCCTCTTGTTTACTGGAAATG 4 24 1 ATCCCCCTCATACCCTTTTTTTTCAAATATACC 5 144 0 AGAGGCTCACCCTGCTTTTTAATGTCATAT 6 7 1 ATGAAATTCCCCCATTTTCGAATCTGTAATTG 8 9 1 ATCAGATCCCCCCATTTTCTTTCTATTATATA 8 42 0 AAGAATTGACCTCCTCTTTTTACTAGTCTGAC 11 216 0 GCTTGCTGATCACCATATTTTTTTGCACTGTTT 12 179 1 GATTTCTCCCCTTTTCGATCCTTTAATAT 12 281 0 TATCGCCACCGCCTTTTTTAACCAGATTATG 13 8 1 CTATTTCTCCCCCTTTTATTTAAACAAAAAA 14 279 0 CCTTGGACAACCCCCTATTCTCATGCTCCGTCG 15 155 1 ****** ** * * MAP Score: 20.6642 Motif 5 TAAAGGACGGCGAAGAATCGGGCCG 1 2 1 GTCCTTTTATACAGCAGGAAAGGCTGTTGAACG 3 88 1 AACGTGTTAAAAAGCAGATAAAATGGGGGCAGT 3 117 1 TACCCCCGGGAAAATTGGTATAGATCACTAGAT 5 102 1 CTTAAAATTCACAGTTGGTGAGACTTTAAGATT 7 104 1 TTAAGATTACAAAAAAGGTAAAAAAACCAAATC 7 129 1 GGCATCAGTGATTGAGGGAAAAAAACGGGAAGT 11 58 1 ATATGGATGGAAGGGGGATAAGAGGGTCGATTT 12 57 1 AATAGTGGTGAATGAAGGGATAACGGTTGAAGT 13 92 1 ATCATGAAAGAAAGCAGGAAAAGAC 14 2 0 TGTGACTGGTAAAGCAGGCAAGACCTAAAATTT 14 193 1 TGTTTAAATAAAAGGGGGAGAAATAG 14 284 1 TGTGACTGGGCAGGCAGGCAAGACCCAATGATG 15 52 1 TGTTACTGCGAAAGCAGGCAAAACCTAAATGGT 16 129 1 TGATACAAAAAAAGCTGGTGAAAGGCGGCCACC 16 238 1 GGGTGGGTGAAATGTCGGGGAAAGTGAGAGATT 17 112 1 TTAGAGGCCGTAGGCGGGGAAGAGAATGTGATT 17 168 1 **** ** **** MAP Score: 5.53181 Motif 6 TAAAGGACGGCGAAGAATCGGG 1 1 1 TATATCATTTTAAAACAGGGGGCATCCTC 1 151 1 GTCTCAATGAAAAAGAACGGATTGCATACAG 2 25 0 CTGCTGTATAAAAGGACAGCGGCACTGTACT 3 74 0 TTTTATTTTCTAAAGAAAGGAACTTGCCAA 3 181 1 GATTATTTAAAAAGAAAGCGGGAATGACAG 5 9 0 GGTATATTTGAAAAAAAAGGGTATGAGGGGG 5 144 1 ATAAAAACGGATACGGAGGGGTTGGC 6 176 1 TGATTGAGGGAAAAAAACGGGAAGTTCATTC 11 66 1 TTGGGTGCGCAAAAGAACGAGAATGAACTTC 11 86 0 TCAGACTAGTAAAAAGAGGAGGTCAATTCTT 11 217 1 ACAATATAAGAAACGAAAGAATGAGGCTTTT 12 101 1 ATAATCTGGTTAAAAAAGGCGGTGGCGATA 13 9 0 AAATTTGCGTAAATGAAAAAGGATCGCTGTG 14 220 1 TTTTTTGTTTAAATAAAAGGGGGAGAAATAG 14 279 1 ATTAATGCCTAAAAAACAGGGCATTTTAACT 15 95 1 TCAACACCAAAAATGAAAGCGTTGACATCTC 16 45 1 CAGTCCCCCCATAAAAAGGAGGTATACAC 16 281 1 GTTACAATTATAATGAAAGCGTAACCAAAAC 17 77 1 AGCGTAACCAAAACGAAGGGGTGGGTGAAAT 17 94 1 *** ******* MAP Score: 4.60132 Motif 7 AACGGATTGCATACAGAATGGGGAGAATGAA 2 5 0 TGAAAATTTGTTATAAAAGAAGGATACAAATCTTTC 2 82 0 GTTTTTTGTATATGAAAAAATAAAAGTACAGTGCCG 3 50 1 CTGTTGAACGTGTTAAAAAGCAGATAAAATGGGGGC 3 111 1 GGGGGCAGTAACAGAGAAAACAAAAATGTATGCACT 3 141 1 TTTCTTTAGAAAATAAAATGTAAGTGCATACATTTT 3 163 0 AGTAAACAAGAGGGAGAATACGAAGATCCTCCCTGT 4 14 0 TAGATTATTTAAAAAGAAAGCGGGAATGACAG 5 6 0 TATGGTATATTTGAAAAAAAAGGGTATGAGGGGGAT 5 141 1 CTTTAAGATTACAAAAAAGGTAAAAAAACCAAATCT 7 127 1 CAATTACAGATTCGAAAATGGGGGAATTTCAT 8 6 0 TAATTGTATATAATAGAAAGAAAATGGGGGGATCTG 8 36 1 TAACATTTTGAAATAGAATGAAAGACGGTGAGGAC 9 172 1 ATTGGGTGCGCAAAAGAACGAGAATGAACTTCCCGT 11 82 0 GTTGTGTAAAAGGGCAAATGTAAACGGTTAAACTGG 11 135 1 AAGGTCAGACTAGTAAAAAGAGGAGGTCAATTCTT 11 213 1 ATATTAAAGGATCGAAAAGGGGAGAAATC 12 281 1 CATAATCTGGTTAAAAAAGGCGGTGGCGATA 13 5 0 TATAAATTGAAGCAAAATTGAAAGTGTGGTTAAATA 13 60 1 GGTTGAAGTGAATGAGAAGGGAGAAAATACA 13 116 1 TGCTCAATCATGAAAGAAAGCAGGAAAAGAC 14 5 0 TTTTTTGTTTAAATAAAAGGGGGAGAAATAG 14 279 1 GACAATCAAAATGAAAAAAGTGAGAAATACCGGCTG 15 213 0 GATAGTCAACACCAAAAATGAAAGCGTTGACATCTC 16 40 1 TCACCTCCTAAAAGAGAATAAAAAAACCTAAATGAC 16 193 0 AGCATTTGATACAAAAAAAGCTGGTGAAAGGCGGCC 16 232 1 ATGAAAGCGTAACCAAAACGAAGGGGTGGGTGAAAT 17 89 1 * **** * *** * MAP Score: 2.26329 Motif 8 TAACAAATTTTCAGAAATTAATATTGACAGTTTGATAAGGGC 2 105 1 ATAAGGGCGGTGCTAAATTCGTAATGACAAGTATCATAAATT 2 139 1 ATGACAAGTATCATAAATTGGTCATAACAAATATGGTGCTTG 2 162 1 GAAAGCGCTATAAAAAAGTGTTGACTACCTGTATATACAGGA 6 101 1 ATAAGTTGTATATACAAGTTATAAAAACGGATACGGAGGGGT 6 156 1 CGGATCACTATCCGAAAATTCTTAAGACACAGAGGTGGAAC 10 36 1 TGACCTTACAGCTAAAAATCATGACAACGAATTCACAGGCGT 11 178 0 TTTCAATTTTGCTTCAATTTATAACAACATCTGGCATAGACG 13 41 0 TGTGAAGTATTTCACAATTAATTTTTACGAATTTTTGTCTAC 14 57 1 AAATGAACGTTATTACAGTTATCACCACATATGGCGGGATTG 15 12 1 * *** * * * ** * MAP Score: 1.62574