AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions007_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944240639 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ycbC 226 similar to 5-dehydro-4-deoxyglucarate dehydratase #1 ycbD 29 similar to aldehyde dehydrogenase #2 ycgM 190 similar to proline oxidase #3 ycnG 106 similar to 4-aminobutyrate aminotransferase #4 ycnH 68 similar to succinate-semialdehyde dehydrogenase #5 yfmT 249 similar to benzaldehyde dehydrogenase #6 yloD 233 similar to guanylate kinase #7 yloI 80 similar to pantothenate metabolism flavoprotein #8 def 26 polypeptide deformylase #9 dhaS 229 aldehyde dehydrogenase #10 gbsA 198 glycine betaine aldehyde dehydrogenase #11 yusM 300 similar to proline dehydrogenase #12 rocA 226 pyrroline-5 carboxylate dehydrogenase #13 ywdH 167 alternate gene name: ipa-58r; similar to aldehyde dehydrogenase #14 aldY 183 aldehyde dehydrogenase #15 iolA 300 methylmalonate-semialdehyde dehydrogenase Motif 1 CTTTTTTATAAAATATCAGAAAATAAAGATATTGA 0 77 1 GATGTGAAAGAAAAATTAATAAAAGCGCTTACAGA 0 164 1 TAGAGGCCGTATACACAAATAACAGGAGGTTATGT 0 199 1 CCAGAAAAAACACGAAAGGGGCAATGGGC 1 4 1 ATTCTGTCGAATAAAGGAGAAAAGGAAGCGACAAA 2 15 0 CGACAATATAATACAACAAGAACTGCATATAATGA 5 46 0 GCTTTAAATGATAGAAGCGAAACAGCGTTGTCGTA 5 112 1 ACCGCACGGAAAAAAATAACAACCTACATGATATA 7 27 0 CAATAAGCTTATAGATAAGAAAAGGAGATTTCATC 9 10 0 GATAAAGAACATAAAGAAATAACTTAACGAATTTA 10 36 0 TATCTTAACGAAACATGAGGAAAAGTCAAAAAGAA 10 67 1 TTTTTTGCGTAAAGAGCAAAAAACGCAAAATAAAT 12 44 1 TTTTTCAGCAAAAGACAAGAAAATGGCATGATTCT 12 148 1 GGTTTGTCAGAAAAAATAACAAACTCATATCTGCG 13 71 0 CATACCTTACAAAAAGGAGAAACGGA 13 151 1 TCCGGTATAGATAGACGAGAAACTGAAAGGGAAAC 14 89 1 ATATAATAAAAATAATGAAAAAATGTAGTGTTTAT 15 47 1 ACGCTTTCAAAAACACCAAAAAAATAAATGGCGGA 15 179 0 *** * ** *** * MAP Score: 21.029 Motif 2 GGCTGACCAGGCTGTTTTTTTGCTGCGCAG 0 21 1 AGTCAATATCTTTATTTTCTGATATTTTAT 0 84 0 TCCCCCTGTCGGTATTTTCTTATCATTCTG 3 79 0 AGCAGACCCGGCCATTTTCTTTCCAATGA 4 9 0 TATGGGCGAATCTATTTTTTCTATCGGTTC 5 196 0 CATGTAGGTTGTTATTTTTTTCCGTGCGGT 7 32 1 CAAACCTCCAGTCATTTTTTATGGTCTGTT 9 203 0 AATTCGTTAAGTTATTTCTTTATGTTCTTT 10 38 1 TAATTTTGCATTTGTTTTTTGCGTAAAGAG 12 30 1 CAAGAATCATGCCATTTTCTTGTCTTTTGC 12 155 0 GAAGACAACATTTATTTTTTTGGAGGGTGC 13 13 0 ATATGAGTTTGTTATTTTTTCTGACAAACC 13 76 1 TCATTTCTTGGTTATATTCTAATCGCATAA 15 98 0 TTACTTTTTGGTCATTTCTTGGTTATATTC 15 109 0 TGCACAACAGGTTACTTTTTGGTCATTTCT 15 120 0 GCATCCGCCATTTATTTTTTTGGTGTTTTT 15 176 1 ********** MAP Score: 13.7171 Motif 3 AATAAAGGAGAAAAGGAAGCGACAAAAAACA 2 3 0 TTTTGATGGTATCAGAAGGAGAAACTACAAA 3 3 0 AAGAGAAGTCAGAATGATAAGAAAATACCGACAGGGGG 3 70 1 ATTTTAAGTAATCATGAAAAGAAAGGAATGTTCAAT 4 42 1 TCGACAATATAATACAACAAGAACTGCATATAATGATT 5 44 0 CGCTTCTATCATTTAAAGCAGAAAAATATTTTATTGAC 5 93 0 TAGCACAAGTAGCAACCTATATCATGTAG 7 1 1 TTTCGTTAAGATAAAGAACATAAAGAAATAACTTAACG 10 42 0 ACATGAGGAAAAGTCAAAAAGAAAAATCAAAATGGGAC 10 79 1 AGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCA 11 218 0 TTGCGTAAAGAGCAAAAAACGCAAAATAAATTTGCGTT 12 48 1 ACCATACCTTACAAAAAGGAGAAACGGA 13 149 1 CTGTATATTCAGTATAAGGCGAAACACACATGTTCTCC 14 35 1 TATCCGGTATAGATAGACGAGAAACTGAAAGGGAAACC 14 87 1 CTTCAGCGGAAATAGAAGAAGACATGCAGGACCAAAGG 14 144 1 CTTTTAATCAAGTAAGAGAAGTAAGAGAAGGCC 15 5 0 TTTCAAAAACACCAAAAAAATAAATGGCGGATGCATAT 15 172 0 * * ** ***** * MAP Score: 11.5367 Motif 4 ATTTGCTCGCGATGAAAAAAGCGCATTTCA 11 101 0 CTTGTCTTTTGCTGAAAAAACTTGTTGAAT 12 137 0 GCAATTTACAAAAGAAAAAAGCTACAATAA 9 39 0 TAATAAAAATAATGAAAAAATGTAGTGTTT 15 50 1 ATCATTTAAAGCAGAAAAATATTTTATTGA 5 94 0 AGCGGATGTGAAAGAAAAATTAATAAAAGC 0 160 1 GAAAAGTCAAAAAGAAAAATCAAAATGGGA 10 86 1 ACAAAACCGCACGGAAAAAAATAACAACCT 7 37 0 TCTTTGGTATGATGAAAAGTACCAATTATA 3 44 0 AACGAAACATGAGGAAAAGTCAAAAAGAAA 10 73 1 TAATTTTCTAAAGGAAAAGAGGGTCAGT 10 8 0 TTCTTGGCTTGCTGAAAAGTGGATATTGAT 15 218 1 GGGATTCTGCGCAGCAAAAAAACAGCCTGG 0 27 0 CCAGAAAAAACACGAAAGGG 1 0 1 GCAAAAAACAAATGCAAAATTATTTTGCGG 12 22 0 AATAGAAATCAAGGCAAAATCAATGAATAA 9 77 0 TTTAAGTAATCATGAAAAGAAAGGAATGTT 4 44 1 GGATTGAATAGCAGAAATAAGCTGTGATAG 9 141 0 TAAAGAACATAAAGAAATAACTTAACGAAT 10 39 0 ACTAATGAAGGAGGCAATAAGA 15 288 1 ********** MAP Score: 11.1292 Motif 5 GACCAGGCTGTTTTTTTGCTGCGCAGAATCC 0 25 1 AGTCAATATCTTTATTTTCTGATATTTTATA 0 83 0 TATTGACTTATTGTTTATTTGTCTTACAATT 0 106 1 GCCCCTTTCGTGTTTTTTCTGG 1 1 0 AAGATTCTGATTATTTTTGTGGGTTTGCCAC 2 78 0 AATCAGAATCTTTGTATTTTGAGGATATTGT 2 97 1 TTTGTAGTTTCTCCTTCTGATACCATCAA 3 8 1 CGGTATTTTCTTATCATTCTGACTTCTCTTT 3 69 0 AGTCAATAAAATATTTTTCTGCTTTAAATGA 5 92 1 ATGTAGGTTGTTATTTTTTTCCGTGCGGTTT 7 33 1 TATTGTAGCTTTTTTCTTTTGTAAATTGCAA 9 40 1 CCATTTTGATTTTTCTTTTTGACTTTTCCTC 10 83 0 GTGATCCTCCTTTGGTTTCTGTTCATTTTAT 11 217 1 TAATTTTGCATTTGTTTTTTGCGTAAAGAGC 12 30 1 AAATTTATTTTGCGTTTTTTGCTCTTTACGC 12 50 0 GTGATCACCTTTCTCTTTTTCCGATCTTGAA 12 84 0 AAGACAACATTTATTTTTTTGGAGGGTGCTT 13 11 0 AAAATAAATGTTGTCTTCCTGCATTTTATCA 13 25 1 ATGAGTTTGTTATTTTTTCTGACAAACCTTG 13 78 1 CATCCGCCATTTATTTTTTTGGTGTTTTTGA 15 177 1 CGTTTAATTCTTGGCTTGCTGAAAAGTGGAT 15 211 1 ** ******** MAP Score: 11.0778 Motif 6 AGTCAATATCTTTATTTTCTGATATTTTATAAAAAAGCGGTA 0 72 0 TATTGACTTATTGTTTATTTGTCTTACAATTAAACAAAAGGA 0 106 1 AAGATTCTGATTATTTTTGTGGGTTTGCCACAATCAGATAGT 2 67 0 GAACATTCCTTTCTTTTCATGATTACTTAAAATGATAGCAGA 4 33 0 ATATGCAGTTCTTGTTGTATTATATTGTCGAAATTTGACGTA 5 51 1 AATAAAATATTTTTCTGCTTTAAATGATAGAAGCGAAACAGC 5 96 1 AGGTTGTTATTTTTTTCCGTGCGGTTTTGTAAAGTGCAGAGG 7 37 1 TTATTGTAGCTTTTTTCTTTTGTAAATTGCAATATCGGTTAT 9 39 1 TCACAGCTTATTTCTGCTATTCAATCCAGGAATCAATGTGCT 9 144 1 ACTGACCCTCTTTTCCTTTAGAAAATTAAATTCGTTAAG 10 7 1 GTTAAGTTATTTCTTTATGTTCTTTATCTTAACGAAACATGA 10 43 1 CCATTTTGATTTTTCTTTTTGACTTTTCCTCATGTTTCGTTA 10 72 0 AAATAAAAATTTAATGTTTTTAACAACCTTAATCTAACATAT 10 135 0 TAATTTTGCATTTGTTTTTTGCGTAAAGAGCAAAAAACGCAA 12 30 1 TCATGCCATTTTCTTGTCTTTTGCTGAAAAAACTTGTTGAAT 12 137 0 AAAATAAATGTTGTCTTCCTGCATTTTATCAAATTCCTGCTG 13 25 1 CAGATATGAGTTTGTTATTTTTTCTGACAAACCTTGCGCGAT 13 73 1 GGCCTTCTCTTACTTCTCTTACTTGATTAAAAGATTAATAT 15 9 1 ACTACATTTTTTCATTATTTTTATTATATTAATCTTTTAATC 15 34 0 TGGTCATTTCTTGGTTATATTCTAATCGCATAATACCCATAA 15 89 0 CATCCGCCATTTATTTTTTTGGTGTTTTTGAAAGCGTTTAAT 15 177 1 ** ** * ** * ** MAP Score: 10.2523 Motif 7 TCAATATCTTTATTTTCTGATATTTTATAAAAAAG 0 77 0 TGTTTTTTGTCGCTTCCTTTTCTCC 2 0 1 TTTGTCGCTTCCTTTTCTCCTTTATTCGACAGAAT 2 15 1 TTTGTAGTTTCTCCTTCTGATACCATCAA 3 4 1 CTTATCATTCTGACTTCTCTTTGGTATGATGAAAA 3 56 0 CCCCTGTCGGTATTTTCTTATCATTCTGACTTCTC 3 72 0 ATTGAACATTCCTTTCTTTTCATGATTACTTAAA 4 44 0 CAACGCTGTTTCGCTTCTATCATTTAAAGCAGAAA 5 107 0 CATAGGATAGTAATTTTTACTAATCGTATATTCAA 5 148 1 GGCGAATCTATTTTTTCTATCGGTTCATCTTGCAT 5 187 0 ATGTAGGTTGTTATTTTTTTCCGTGCGGTTTTGTA 7 33 1 TGAATTCTCCCCCTCTGCACTTTAC 7 65 0 AAGCTTATTGTAGCTTTTTTCTTTTGTAAATTGCA 9 35 1 GATTTTGCCTTGATTTCTATTATAGAATGTTTGTA 9 86 1 CTATCACAGCTTATTTCTGCTATTCAATCCAGGAA 9 141 1 AAACCTCCAGTCATTTTTTATGGTCTGTTCTGAGA 9 197 0 ATTCGTTAAGTTATTTCTTTATGTTCTTTATCTTA 10 39 1 ATTTTGATTTTTCTTTTTGACTTTTCCTCATGTTT 10 77 0 GATCCTCCTTTGGTTTCTGTTCATTTTATAGTTTC 11 219 1 ATTTATTTTGCGTTTTTTGCTCTTTACGCAAAAAA 12 44 0 TGATCACCTTTCTCTTTTTCCGATCTTGAACGCAA 12 79 0 ATGTGAAAAATCTCTTCTGCTTGTCAATCGCGCAA 13 106 0 TCCGTTTCTCCTTTTTGTAAGGTATG 13 151 0 TGGTCCTGCATGTCTTCTTCTATTTCCGCTGAAGC 14 143 0 GGCCTTCTCTTACTTCTCTTACTTGATTAAAAGA 15 9 1 CATTTTTTCATTATTTTTATTATATTAATCTTTTA 15 37 0 GCATCCGCCATTTATTTTTTTGGTGTTTTTGAAAG 15 176 1 * ***** ** ** MAP Score: 8.8881 Motif 8 TTTACCGCTTTTTTATAAAATATCAGAAAATAAAGAT 0 70 1 AACAAGTTTTTTCAGCAAAAGACAAGAAAATGGCATG 12 141 1 GCAAGGTTTGTCAGAAAAAATAACAAACTCATATCTG 13 73 0 GGGGATTCTGTCGAATAAAGGAGAAAAGGAAGCGACA 2 17 0 TTCGCTTCTATCATTTAAAGCAGAAAAATATTTTATT 5 96 0 ACGAATTTAATTTTCTAAAGGAAAAGAGGGTCAGT 10 8 0 CATATTGGCTTCAGCGGAAATAGAAGAAGACATGCAG 14 136 1 GAAGCACCCTCCAAAAAAATAAATGTTGTCTTC 13 6 1 CCAGAAAAAACACGAAAGGGGCAATGG 1 0 1 TAGATTAAGGTTGTTAAAAACATTAAATTTTTATTTA 10 141 1 GCAAGATGAACCGATAGAAAAAATAGATTCGCCCATA 5 189 1 GAATTAAACGCTTTCAAAAACACCAAAAAAATAAATG 15 184 0 CGATATTGCAATTTACAAAAGAAAAAAGCTACAATAA 9 39 0 AAATCACCATACCTTACAAAAAGGAGAAACGGA 13 144 1 TGTGGCAAACCCACAAAAATAATCAGAATCTTTGTAT 2 77 1 TTTTAAGTAATCATGAAAAGAAAGGAATGTTCAAT 4 43 1 ATATTAATCTTTTAATCAAGTAAGAGAAGTAAGAGAA 15 14 0 TTTTTTGCTCTTTACGCAAAAAACAAATGCAAAATTA 12 30 0 TCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGA 11 224 0 CAAATGATCCTTTGTCGAAATAACGGAAGGCGGCATT 11 156 1 TTAGAATATAACCAAGAAATGACCAAAAAGTAACCTG 15 106 1 AAAGATTAATATAATAAAAATAATGAAAAAATGTAGT 15 39 1 ** **** * *** MAP Score: 8.85352 Motif 9 AAAACACCAAAAAAATAAATGGCGGATGCATATTTACATACAA 15 162 0 CTGATATTTTATAAAAAAGCGGTAAATCACTGTCCGGCCGGGA 0 53 0 ATGAACCGATAGAAAAAATAGATTCGCCCATATTTTGATTTGC 5 194 1 TCTTTACGCAAAAAACAAATGCAAAATTATTTTGCGGAGGCTT 12 16 0 AGAACAGACCATAAAAAATGACTGGAGGTTTGTTACGG 9 201 1 TAATTGTAAGACAAATAAACAATAAGTCAATATCTTTATTTTC 0 95 0 GATCCTTTGTCGAAATAACGGAAGGCGGCATTTGAGATTGCTG 11 161 1 ATGTTCTCCACTAAAAAAGAGTATATCCGGTATAGATAGACGA 14 64 1 GGCAAAATCAATGAATAACCGATATTGCAATTTACAAAAGAAA 9 52 0 GCAAACCCACAAAAATAATCAGAATCTTTGTATTTTGAGGATA 2 81 1 CCGCACGGAAAAAAATAACAACCTACATGATATAGGTTGCTAC 7 18 0 AAAAGTCAAAAAGAAAAATCAAAATGGGACTTTGACAGTTTAA 10 87 1 CAGAATGATAAGAAAATACCGACAGGGGGATATTCAC 3 79 1 CACCCTCCAAAAAAATAAATGTTGTCTTCCTGCATTTTATCAA 13 14 1 TAGAGGCCGTATACACAAATAACAGGAGGTTATGTTG 0 199 1 CAAGGTTTGTCAGAAAAAATAACAAACTCATATCTGCGTTTTC 13 66 0 ATAAAGTTTGTTAAATAAAAATTTAATGTTTTTAACAACCTTA 10 146 0 * *** ** * * * * MAP Score: 8.56889 Motif 10 CGGCTGACCAGGCTGTTTTTTTGCTGCGCAGAATCCCGGC 0 20 1 CTGTAAGCGCTTTTATTAATTTTTCTTTCACATCCGCTCC 0 158 0 AAAATAATCAGAATCTTTGTATTTTGAGGATATTGTGAAC 2 92 1 CCCCCTGTCGGTATTTTCTTATCATTCTGACTTCTCTTTG 3 68 0 ATGATTAGAATATTTTGAATATTTCTAGGAGGAACTTTTG 5 10 0 ATTCTAATCATTATATGCAGTTCTTGTTGTATTATATTGT 5 39 1 GTCAATAAAATATTTTTCTGCTTTAAATGATAGAAGCGAA 5 93 1 GCCCATATTTTGATTTGCGGTTATAAAGGAGATGCTGACC 5 219 1 TTTTATGGTCTGTTCTGAGATTCTTGGTGATAGCACATTG 9 177 0 ATTTTGATTTTTCTTTTTGACTTTTCCTCATGTTTCGTTA 10 72 0 TGCTTTAATATTCTTTGATAGTGATCATGATGCATGTGTC 11 10 1 ACGGAAGGCGGCATTTGAGATTGCTGCTGATTATCCATTG 11 178 1 TGGTTTCTGTTCATTTTATAGTTTCCTTCAGACTGGGAGT 11 229 1 AACGCAAATTTATTTTGCGTTTTTTGCTCTTTACGCAAAA 12 46 0 AAAATGGCATGATTCTTGCATTTTTATTCATATGCGAAGA 12 167 1 ACGCAGATATGAGTTTGTTATTTTTTCTGACAAACCTTGC 13 70 1 GTCCTGCATGTCTTCTTCTATTTCCGCTGAAGCCAATATG 14 136 0 ATTATTTTTATTATATTAATCTTTTAATCAAGTAAGAGAA 15 23 0 ATCCGCCATTTATTTTTTTGGTGTTTTTGAAAGCGTTTAA 15 178 1 ATCCATACAAGTGTATGTGTTTACTAATGAAGGAGGCAAT 15 266 1 * * ** * ** *** MAP Score: 8.39162 Motif 11 TAAAAGCGCTTACAGATAGAGGCCGTATACAC 0 183 1 CCGTATACACAAATAACAGGAGGTTATGTTG 0 205 1 CCAGAAAAAACACGAAAGGGGCAATGGGC 1 9 1 TCTGTCGAATAAAGGAGAAAAGGAAGCGACAA 2 16 0 TTTTCATCATACCAAAGAGAAGTCAGAATGAT 3 56 1 GATAAGAAAATACCGACAGGGGGATATTCAC 3 85 1 TGATTACTTAAAATGATAGCAGACCCGGCCAT 4 24 0 AGTAATCATGAAAAGAAAGGAATGTTCAAT 4 48 1 TTTCTGCTTTAAATGATAGAAGCGAAACAGCG 5 107 1 ATGCAAGATGAACCGATAGAAAAAATAGATTC 5 187 1 AGCTTATAGATAAGAAAAGGAGATTTCATC 9 8 0 TGCAATTTACAAAAGAAAAAAGCTACAATAAG 9 38 0 AGACCATAAAAAATGACTGGAGGTTTGTTACG 9 206 1 TTAATTTTCTAAAGGAAAAGAGGGTCAGT 10 7 0 TAAGATAAAGAACATAAAGAAATAACTTAACG 10 42 0 TCCTTTGTCGAAATAACGGAAGGCGGCATTTG 11 163 1 AATGAACAGAAACCAAAGGAGGATCACAATGG 11 212 0 CAAGATCGGAAAAAGAGAAAGGTGATCACCTG 12 86 1 TTTTTTCAGCAAAAGACAAGAAAATGGCATGA 12 147 1 ATATTTCATAACACGAGGGGGACTACAT 12 208 1 GGTTTGTCAGAAAAAATAACAAACTCATATCT 13 74 0 CACCATACCTTACAAAAAGGAGAAACGGA 13 148 1 AGATCCTTACATAAGAGAGGAGACTCT 14 5 0 ATAGACGAGAAACTGAAAGGGAAACCTCATTC 14 99 1 AATATAATAAAAATAATGAAAAAATGTAGTGT 15 46 1 *** ** ***** MAP Score: 6.18183 Motif 12 AAGTCAATATCTTTATTTTCTGATATTTTATAAAAAAG 0 77 0 AAAATAAAGATATTGACTTATTGTTTATTTGTCTTACA 0 96 1 CCTTCCCATATATCCTTTTGTTTAATTGTAAGACAAAT 0 122 0 TTTTTTGTCGCTTCCTTTTCTCCTTTATTCGACAGAAT 2 12 1 TATATGCAGTTCTTGTTGTATTATATTGTCGAAATTTG 5 50 1 GATGAAATCTCCTTTTCTTATCTATAAGCTTATTG 9 7 1 ATAAGCTTATTGTAGCTTTTTTCTTTTGTAAATTGCAA 9 33 1 ATTGATTTTGCCTTGATTTCTATTATAGAATGTTTGTA 9 83 1 TTCGTTAAGTTATTTCTTTATGTTCTTTATCTTAACGA 10 40 1 CAAAGTCCCATTTTGATTTTTCTTTTTGACTTTTCCTC 10 83 0 CCTCCTTTGGTTTCTGTTCATTTTATAGTTTCCTTCAG 11 222 1 GCAAAATAATTTTGCATTTGTTTTTTGCGTAAAGAGCA 12 24 1 AAAACGCAGATATGAGTTTGTTATTTTTTCTGACAAAC 13 67 1 ATAAACACTACATTTTTTCATTATTTTTATTATATTAA 15 44 0 GCATCCGCCATTTATTTTTTTGGTGTTTTTGAAAGCGT 15 176 1 * * *** * * *** MAP Score: 2.94523