AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions007_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944240674 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ycbA 300 alternate gene name: yzgA; similar to two-component sensor histidine kinase [YcbB] #1 ycbC 226 similar to 5-dehydro-4-deoxyglucarate dehydratase #2 ycbD 29 similar to aldehyde dehydrogenase #3 ycgK 192 similar to transcriptional regulator (LysR family) #4 cah 71 cephalosporin C deacetylase #5 ycgL 83 ycgL #6 ycgM 190 similar to proline oxidase #7 ycnG 106 similar to 4-aminobutyrate aminotransferase #8 ycnH 68 similar to succinate-semialdehyde dehydrogenase #9 yfmT 249 similar to benzaldehyde dehydrogenase #10 yloB 115 similar to calcium-transporting ATPase #11 yloC 82 similar to hypothetical proteins #12 yloD 233 similar to guanylate kinase #13 yloI 80 similar to pantothenate metabolism flavoprotein #14 def 26 polypeptide deformylase #15 dhaS 229 aldehyde dehydrogenase #16 gbsA 198 glycine betaine aldehyde dehydrogenase #17 yusM 300 similar to proline dehydrogenase #18 rocA 226 pyrroline-5 carboxylate dehydrogenase #19 yweB 176 alternate gene name: ipa-75d; similar to glutamate dehydrogenase #20 yweA 300 alternate gene name: ipa-74d; similar to hypothetical proteins from B. subtilis #21 ywdH 167 alternate gene name: ipa-58r; similar to aldehyde dehydrogenase #22 aldY 183 aldehyde dehydrogenase #23 iolA 300 methylmalonate-semialdehyde dehydrogenase Motif 1 TCCTTTGTCGAAATAACGGAAGGCGGCATTTGA 17 163 1 AGATGTTACTAGAAAAAGAGAGGGAAATCGTCC 20 77 1 TTCTTTTCGTAAATGATGATATGGATTATGTTA 3 98 1 TTAATTTTCTAAAGGAAAAGAGGGTCAGT 16 6 0 TCTGTCGAATAAAGGAGAAAAGGAAGCGACAAA 6 15 0 CCAGAAAAAACACGAAAGGGGCAATGGGC 2 6 1 GTAATCATGAAAAGAAAGGAATGTTCAAT 8 49 1 AATGATAAGAAAATACCGACAGGGGGATATTCA 7 82 1 CAGCGGAAATAGAAGAAGACATGCAGGACCAAA 22 147 1 TCATTTACGAAAAGAAGGAGCTGGTTCAAATTA 3 81 0 ATAAGCTTATAGATAAGAAAAGGAGATTTCATC 15 10 0 CCGTATACACAAATAACAGGAGGTTATGTTG 1 205 1 TACCTTACAAAAAGGAGAAACGGA 21 153 1 TCATTGGAAAGAAAATGGCCGGGTCTGCTATC 8 9 1 GCAAAAGACAAGAAAATGGCATGATTCTTGCAT 18 155 1 TAGATAGACGAGAAACTGAAAGGGAAACCTCAT 22 96 1 TTAATTTTTAAGAAAAAGAACTGGTAATTCGCG 20 205 1 CGTTTTCTAAAAACGCCGAGATGTATCGGGATG 3 36 0 TTCCTGCTGAAAACGCAGATATGAGTTTGTTAT 21 58 1 CCGGCCAAAAAAACAATGAGGTGAAAAAG 19 157 1 AAATGAACAGAAACCAAAGGAGGATCACAATGG 17 212 0 AACAGACCATAAAAAATGACTGGAGGTTTGTTA 15 203 1 ATTTGTAGTCAGAGACTGAGATGTTTTCAGTCT 19 17 1 TTATAACCGCAAATCAAAATATGGGCGAATCTA 9 212 0 CTGCGCAGCAAAAAAACAGCCTGGTCAGCCGGC 1 18 0 TGAATCCACAAAAAAAGAGACTGAAAACATCTC 19 34 0 GGTGTTTTGAAGATGACGGCGGGAGGGAGTCGG 17 277 1 TCAAGATCGGAAAAAGAGAAAGGTGATCACCTG 18 85 1 TCGAATGCAGGAAGAATGAGAGGGTGTA 10 5 0 AAAAACACCAAAAAAATAAATGGCGGATGCATA 23 173 0 CCCCAAAATAAAAAGCGAGGATGTGATCAACAT 0 161 1 TCAAAAAGAAAAATCAAAATGGGACTTTGACAG 16 92 1 *** ** ** *** MAP Score: 25.0803 Motif 2 ATTTTCAAAATGTTTTTGTCGTATTTTGTAT 0 64 0 CATCCTCGCTTTTTATTTTGGGGAATCGGGA 0 153 0 CTGACCAGGCTGTTTTTTTGCTGCGCAGAAT 1 23 1 CCCCTTTCGTGTTTTTTCTGG 2 0 0 CATCAGGCGGTTTTTTTCTGCAAACTGCCGG 5 34 1 TGTTTTTTGTCGCTTCCTTTTC 6 1 1 AGATTCTGATTATTTTTGTGGGTTTGCCACA 6 77 0 TTGTGAACGCTGGTTTTGTCCATTTACAATA 6 124 1 GTCAATAAAATATTTTTCTGCTTTAAATGAT 9 93 1 TGTAGGTTGTTATTTTTTTCCGTGCGGTTTT 13 34 1 AATTTTGCATTTGTTTTTTGCGTAAAGAGCA 18 31 1 AATTTATTTTGCGTTTTTTGCTCTTTACGCA 18 49 0 TTTCAGTCTCTTTTTTTGTGGATTCAAAAGC 19 41 1 TTCACCTCATTGTTTTTTTGGCCGGCTGTAA 19 151 0 GGCATCTTCGACTTTTTTTGCCCTTTTTTAA 20 17 1 ATGAAAAAGCGCTTTTTCTGCAGAGGACGCT 20 242 1 AGACAACATTTATTTTTTTGGAGGGTGCTTC 21 10 0 GGATATACTCTTTTTTAGTGGAGAACATGTG 22 61 0 ATCCGCCATTTATTTTTTTGGTGTTTTTGAA 23 178 1 * ********* MAP Score: 21.5934 Motif 3 GAATCATACAAAATACGACAAAAACATTTTGAA 0 59 1 TTTTTTGCGTAAAGAGCAAAAAACGCAAAATAA 18 44 1 CCCTTTTTTAAAATAGGATAAAAGATATAAAAT 20 37 1 CTTTTTTATAAAATATCAGAAAATAAAGATATT 1 77 1 ACGCTTTCAAAAACACCAAAAAAATAAATGGCG 23 181 0 CATACCTTACAAAAAGGAGAAACGGA 21 151 1 TATCTTAACGAAACATGAGGAAAAGTCAAAAAG 16 67 1 CCAGAAAAAACACGAAAGGGGCAATGG 2 4 1 TCCAAGATATAAAAATGATGAAAATGATAGGTT 3 151 1 TTTTTCAGCAAAAGACAAGAAAATGGCATGATT 18 148 1 TCGTTAAGATAAAGAACATAAAGAAATAACTTA 16 45 0 ATATAATAAAAATAATGAAAAAATGTAGTGTTT 23 47 1 ATTCTGTCGAATAAAGGAGAAAAGGAAGCGACA 6 17 0 ATTGCAATTTACAAAAGAAAAAAGCTACAATAA 15 39 0 GAATCTCAGAACAGACCATAAAAAATGACTGGA 15 194 1 GTTTGTCAGAAAAAATAACAAACTCATATCTGC 21 72 0 CTATTTTAAAAAAGGGCAAAAAAAGTCGAAGAT 20 20 0 GAAACTATAAAATGAACAGAAACCAAAGGAGGA 17 221 0 TCCGGTATAGATAGACGAGAAACTGAAAGGGAA 22 89 1 GAGAAGTCAGAATGATAAGAAAATACCGACAGG 7 72 1 GTAATTCGCGAATTATGAAAAAGCGCTTTTTCT 20 228 1 ATAACCAAGAAATGACCAAAAAGTAACCTGTTG 23 113 1 CAATAAGCTTATAGATAAGAAAAGGAGATTTCA 15 12 0 CGACAATATAATACAACAAGAACTGCATATAAT 9 48 0 TATTTTGGGGAATCGGGAGAAAACCTGCAAATT 0 138 0 *** * ** **** MAP Score: 21.0501 Motif 4 CGATTCCCCAAAATAAAAAGCGAGGATGTGATCAA 0 156 1 TCTGCGCAGCAAAAAAACAGCCTGGTCAGCCGGCT 1 17 0 AAAAGGATATATGGGAAGGAGCGGATGTGAAAGAA 1 141 1 ATCATTTACGAAAAGAAGGAGCTGGTTCAAATTAC 3 80 0 CGTCCAAGATATAAAAATGATGAAAATGATAGGTT 3 149 1 TATAAAACAAAGGGGAATAATCGGAA 4 55 1 CAGTTTGCAGAAAAAAACCGCCTGATGATATGCGG 5 26 0 AACTGCCGGAATGAGAACAGACTGGAGACGAATAG 5 56 1 ATAAAGGAGAAAAGGAAGCGACAAAAAACA 6 5 0 TGGCAAACCCACAAAAATAATCAGAATCTTTGTAT 6 79 1 AGTCAGAATGATAAGAAAATACCGACAGGGGGATA 7 76 1 TCATTGGAAAGAAAATGGCCGGGTCTGCTATCA 8 8 1 TATCGAATGCAGGAAGAATGAGAGGGTGTA 10 5 0 CCCTTTTATTATGAGAACAGGGAAGAATTGGGTGT 11 51 1 AGAACAGACCATAAAAAATGACTGGAGGTTTGTTA 15 201 1 GGAAAAGTCAAAAAGAAAAATCAAAATGGGACTTT 16 85 1 TTGAATCCACAAAAAAAGAGACTGAAAACATCTCA 19 33 0 TCCAATGAAGAAAGGAATTGGCGGGCTGATTTTTT 19 104 1 ACAGCCGGCCAAAAAAACAATGAGGTGAAAAAG 19 153 1 AGGATAAAAGATATAAAATGTCAGGCAGATGTTAC 20 51 1 AGATGTTACTAGAAAAAGAGAGGGAAATCGTCCAT 20 77 1 ATTAATTTTTAAGAAAAAGAACTGGTAATTCGCGA 20 204 1 AAGGTTTGTCAGAAAAAATAACAAACTCATATCTG 21 73 0 ATACCTTACAAAAAGGAGAAACGGA 21 152 1 TTAATCAAGTAAGAGAAGTAAGAGAAGGCC 23 5 0 GATTAATATAATAAAAATAATGAAAAAATGTAGTG 23 42 1 * ***** * * ** MAP Score: 18.705 Motif 5 GATGAAATCTCCTTTTCTTATCTATAAG 15 7 1 CCATTGTGATCCTCCTTTGGTTTCTGTTCAT 17 212 1 AAGATGACCCTCCTTTGGTCCTGCATGTC 22 164 0 CGCTTCCTTTTCTCCTTTATTCGACAGAATC 6 20 1 GCCCATTGCCCCTTTCGTGTTTTTTCTG 2 11 0 TTCCGATTATTCCCCTTTGTTTTATAAGATT 4 50 0 TCTTATTGCCTCCTTCATTAGTAAACACA 23 281 0 ATTTGAACCAGCTCCTTCTTTTCGTAAATGA 3 83 1 ACTGACCCTCTTTTCCTTTAGAAAATT 16 6 1 ACGATTTCCCTCTCTTTTTCTAGTAACATCT 20 77 0 ATGTTTTCAGTCTCTTTTTTTGTGGATTCAA 19 37 1 CGTGTCTATTGCCCTTTTATTATGAGAACAG 11 40 1 GGTCAGCATCTCCTTTATAACCGCAAATC 9 230 0 ATCTCAAATGCCGCCTTCCGTTATTTCGACA 17 168 0 TTATGAAAAAGCGCTTTTTCTGCAGAGGACG 20 240 1 AGAGTCTCCTCTCTTATGTAAGGAT 22 4 1 CTATCTGTAAGCGCTTTTATTAATTTTTCTT 1 171 0 TTTCACATCCGCTCCTTCCCATATATCCTTT 1 142 0 TTTGTAGTTTCTCCTTCTGATACCATCAAA 7 9 1 GAATGAGGTTTCCCTTTCAGTTTCTCGTCTA 22 100 0 GACTTTTTTTGCCCTTTTTTAAAATAGGATA 20 26 1 ATGTGAAAAATCTCTTCTGCTTGTCAATCGC 21 110 0 CAGTGATTTACCGCTTTTTTATAAAATATCA 1 64 1 TGAATTCTCCCCCTCTGCACTTTACAAAA 13 61 0 TGTTTTTTGTCGCTTCCTTTTCTCCTTTAT 6 9 1 ******** ** MAP Score: 17.3854 Motif 6 ATTCCCCAAAATAAAAAGCGAGGATGTGATCAAC 0 158 1 CCAGAAAAAACACGAAAGGGGCAATG 2 2 1 ATCATCATTTACGAAAAGAAGGAGCTGGTTCAAA 3 84 0 ACTAAATCTTATAAAACAAAGGGGAATAATCGGA 4 46 1 CGAATAAAGGAGAAAAGGAAGCGACAAAAAACA 6 9 0 CTTTGGTATGATGAAAAGTACCAATTATAACTTT 7 39 0 TCATTGGAAAGAAAATGGCCGGGTCTGCTATCA 8 9 1 TTAAGTAATCATGAAAAGAAAGGAATGTTCAAT 8 45 1 TAATTATAGCATGAAATGGGACGAGTCAGAATAA 10 38 1 AACAGACCATAAAAAATGACTGGAGGTTTGTTAC 15 203 1 CTTTATCTTAACGAAACATGAGGAAAAGTCAAAA 16 64 1 GAAGGAAACTATAAAATGAACAGAAACCAAAGGA 17 224 0 GCAAAAGACAAGAAAATGGCATGATTCTTGCATT 18 155 1 TGAATCCACAAAAAAAGAGACTGAAAACATCTCA 19 33 0 GAATCCAATGAAGAAAGGAATTGGCGGGCTGATT 19 101 1 AAAAAGGGCAAAAAAAGTCGAAGATGCCTCTGCT 20 11 0 TTAAAATAGGATAAAAGATATAAAATGTCAGGCA 20 44 1 AGATGTTACTAGAAAAAGAGAGGGAAATCGTCCA 20 77 1 TGAACCTTGTATAAACAGGAAGGAATTCTCATTG 20 113 1 TTAATTTTTAAGAAAAAGAACTGGTAATTCGCGA 20 205 1 CAGGAATTTGATAAAATGCAGGAAGACAACATTT 21 30 0 AAGGTTTGTCAGAAAAAATAACAAACTCATATCT 21 74 0 ACCATACCTTACAAAAAGGAGAAACGGA 21 149 1 TAGATAGACGAGAAACTGAAAGGGAAACCTCATT 22 96 1 GATTAATATAATAAAAATAATGAAAAAATGTAGT 23 42 1 * **** * * *** MAP Score: 8.47831 Motif 7 AAAGATATAAAATGTCAGGCAGATGTTACTAGAAAAA 20 57 1 GAAGAAAGGAATTGGCGGGCTGATTTTTTAAAGCGCT 19 110 1 GCCGCCGCATATCATCAGGCGGTTTTTTTCTGCAAAC 5 22 1 ATAAGAAAATACCGACAGGGGGATATTCAC 7 86 1 GCGGTAAATCACTGTCCGGCCGGGATTCTGCGCAGCA 1 41 0 AGATAGTTAGAAAGTCGGGGGGGGATTCTGTCGAATA 6 37 0 TTGTCGAAATAACGGAAGGCGGCATTTGAGATTGCTG 17 167 1 TGAACCTTGTATAAACAGGAAGGAATTCTCATTGAAT 20 113 1 AAACAGCCGGCTGACCAGGCTGTTTTTTTGCTGCGCA 1 13 1 TTTGTATCTCAATGACATGCTGAACTGGAATTTGCTC 17 123 0 CGTATACACAAATAACAGGAGGTTATGTTG 1 206 1 TCATTGTTTTTTTGGCCGGCTGTAATGTAAGCGCTTT 19 139 0 * * ***** * ** MAP Score: 8.14464 Motif 8 CTATTTTAAAAAAGGGCAAAAAAAGTCGAA 20 23 0 CTTATAAAACAAAGGGGAATAATCGGAA 4 53 1 TCTCATAATAAAAGGGCAATAGACACGCTA 11 37 0 ATTTTATAAAAAAGCGGTAAATCACTGTCC 1 61 0 CGCGATGAAAAAAGCGCATTTCATGGCGCA 17 94 0 TCTGTCGAATAAAGGAGAAAAGGAAGCGAC 6 18 0 TACCTTACAAAAAGGAGAAACGGA 21 153 1 CTGATTTTTTAAAGCGCTTACATTACAGCC 19 129 1 AAAATTAATAAAAGCGCTTACAGATAGAGG 1 175 1 TCTATCATTTAAAGCAGAAAAATATTTTAT 9 97 0 AAAAAACACGAAAGGGGCAATGGGC 2 14 1 GAATTATGAAAAAGCGCTTTTTCTGCAGAG 20 237 1 TTTTTTGCGTAAAGAGCAAAAAACGCAAAA 18 44 1 ATAGATAAGAAAAGGAGATTTCATC 15 5 0 TCGTTAAGATAAAGAACATAAAGAAATAAC 16 48 0 GGCTTGCTGAAAAGTGGATATTGATATGAA 23 223 1 ********** MAP Score: 8.11576 Motif 9 GTTTTTGTCGTATTTTGTATGATTCTGTAGTCTCC 0 49 0 CAGGCGGTTTTTTTCTGCAAACTGCCGGAATGAGA 5 37 1 ATTTTGAGGATATTGTGAACGCTGGTTTTGTCCAT 6 112 1 ATGATTAGAATATTTTGAATATTTCTAGGAGGAAC 9 15 0 GTATATTCAATTTTATGCAAGATGAACCGATAGAA 9 173 1 GGGTTCTTCGTCCGTATGTAGCGTCAATTAGC 12 211 0 TTTTCCGTGCGGTTTTGTAAAGTGCAGAGGGGGAG 13 49 1 GTAGCTTTTTTCTTTTGTAAATTGCAATATCGGTT 15 44 1 TGCAAAATTATTTTGCGGAGGCTTCTCAAA 18 5 0 TGCATTTGTTTTTTGCGTAAAGAGCAAAAAACGCA 18 36 1 CAACATTTATTTTTTTGGAGGGTGCTTC 21 3 0 GAGTCTCCTCTCTTATGTAAGGATCTGTATATTCA 22 11 1 ACACATACACTTGTATGGATGGTTCCGGATAGATT 23 251 0 * ** ** * * *** MAP Score: 6.55003 Motif 10 TCAGGCGGTTTTTTTCTGCAAACTGCCGGA 5 36 1 CAATAAAATATTTTTCTGCTTTAAATGATA 9 95 1 ACCCTCTCATTCTTCCTGCATTCGATAATT 10 13 1 TATCACAGCTTATTTCTGCTATTCAATCCA 15 142 1 TTCAACAAGTTTTTTCAGCAAAAGACAAGA 18 138 1 GAAAAAGCGCTTTTTCTGCAGAGGACGCTC 20 244 1 ATAAATGTTGTCTTCCTGCATTTTATCAAA 21 28 1 ********** MAP Score: 4.89914 Motif 11 CATCTCGGCGTTTTTAGAAAACGGTGTTTC 3 46 1 GAACCTATCATTTTCATCATTTTTATATCT 3 155 0 CAGGCGGTTTTTTTCTGCAAACTGCCGGAA 5 37 1 TAATTGGTACTTTTCATCATACCAAAGAGA 7 46 1 TCTGCTATCATTTTAAGTAATCATGAAAAG 8 33 1 GTATATTCAATTTTATGCAAGATGAACCGA 9 173 1 TCTTTTTGACTTTTCCTCATGTTTCGTTAA 16 71 0 TCAACAAGTTTTTTCAGCAAAAGACAAGAA 18 139 1 ATAGATTAATTTTTAAGAAAAAGAACTGGT 20 200 1 AAAAAGCGCTTTTTCATAATTCGCGAATTA 20 229 0 AAAAAGCGCTTTTTCTGCAGAGGACGCTCT 20 245 1 CATATCTGCGTTTTCAGCAGGAATTTGATA 21 51 0 TATATTAATCTTTTAATCAAGTAAGAGAAG 23 22 0 CAATATCCACTTTTCAGCAAGCCAAGAATT 23 216 0 ********** MAP Score: 4.43225 Motif 12 TGTCGTATTTTGTATGATTCTGTAGTCTCCAT 0 47 0 AAGGATATATGGGAAGGAGCGGATGTGAAAGA 1 143 1 TTTTATATCTTGGACGAATCATAACAGAAATT 3 133 0 TAAAACAAAGGGGAATAATCGGAA 4 57 1 AGAAAGTCGGGGGGGGATTCTGTCGAATAAAG 6 34 0 AGCATGAAATGGGACGAGTCAGAATAAGCATG 10 45 1 TATGAGAACAGGGAAGAATTGGGTGTTTTAAA 11 60 1 CTCCGCCAATCGGATGATTTCGATTGTCAGCC 12 127 1 GCCAATCAAACGGATGATTCAGGATGCAAGAG 12 169 1 AGATGACGGCGGGAGGGAGTCGG 17 287 1 TTCAAAAGCTGGTACGGATCTTGCATGATGAT 19 63 1 TTTATTTTTTTGGAGGGTGCTTC 21 1 0 TCCTCTCTTATGTAAGGATCTGTATATTCAGT 22 16 1 TACACTTGTATGGATGGTTCCGGATAGATTCA 23 249 0 **** ***** * MAP Score: 2.82979