AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions009_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944240747 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ybxA 127 alternate gene name: ybaD; similar to ABC transporter (ATP-binding protein) #1 ycbN 155 similar to ABC transporter (ATP-binding protein) #2 yfiL 143 similar to ABC transporter (ATP-binding protein) #3 ygaL 300 similar to nitrate ABC transporter (binding protein) #4 yhbI 159 similar to transcriptional regulator (MarR family) #5 yhbJ 35 yhbJ #6 yhcA 40 similar to multidrug resistance protein #7 yhcB 22 similar to flavodoxin #8 yheI 119 similar to ABC transporter (ATP-binding protein) #9 ytgA 279 similar to ABC transporter (membrane protein) #10 msmX 120 multiple sugar-binding transport ATP-binding protein Motif 1 TTGTGTATCTAAAGAAGGGCGGGACAGTTTCTAACT 0 20 1 GCTACAATAGAAAACAGGAAAAGAGAGGGAAGGAGA 1 58 1 AGGGAAGGAGAAACAAAGTTGACTTATATCGTACAA 1 83 1 ATCGTACAAACAAACGGGCTGACCAAAACATATCAG 1 110 1 AGGGCATGAAAAAAAGGCCTGTAAAAGGCCTTTTCA 2 38 0 ATTGTAGAAGAAAGAAAGGCGTGCGGCATGTAGCGG 2 86 0 GCAATGGATCAAAAAAAGGAGTGAGACGAC 2 123 1 AATTGTTGAAAAACCTTGTTGTAACAGCTTTTTATG 3 72 1 CTTGTTTCGCAAATAGAGAAGGAAAAATTATTTCTC 3 125 0 CTCTATTTGCGAAACAAGCAGAGTAAGTGATAAACA 3 143 1 AGTAAGTGATAAACAAGGATATCAAAAATCGTATTT 3 164 1 ATCGTATTTAAAAAAGAGTTGACATATCGGAATAAT 3 191 1 TTATTAAATAAAAAAAAGCCCTGAAATGGGCTTTTC 4 11 0 ATAAAAGCAAGAAAACGCTTGCGAAAAAAATACGGG 4 43 1 CTTGCGAAAAAAATACGGGAGAAAAAGAAATTTTTC 4 60 1 TTTGCGGAAAGCTGGTGAAAATATGTGAGAAGT 5 12 0 TCAAACCATGAAAGGAGGTTGTCTTAG 6 23 1 GGAAAGACAGGTGTATGGGATGTGAAGA 8 2 1 ATGTGAAGACAAATACAGAGGCGAGGGCAGTTCGTG 8 29 1 CAGTTCGTGCCAAACTGGATGAAAAAAGCTGCAAGG 8 56 1 GCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGA 9 67 0 TTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTC 9 93 0 TTTTTTATGTAAATCAGCTTGACAAAAATGGCCAAA 9 116 1 ACATTGATGGCAAAGAGGAGGAGAAAT 9 262 1 AATATGCACGAAAAATGGCTGGGTGATTTTATGAAC 10 16 1 *** * ** * ** * MAP Score: 26.1763 Motif 2 TGTGTATCTAAAGAAGGGCGGGACAGTTTCT 0 21 1 CAGTATCTAAAAAAAGGGCATAGATCCAGTT 0 52 0 AGGGCATGAAAAAAAGGCCTGTAAAAGGCCT 2 43 0 CAAACTGGATGAAAAAAGCTGCAAGGAAAAA 8 66 1 CCCTCTCGCTAAAATGGGCAGCGTTCATAAA 10 43 0 ACGCTTCTCTGAAAAGGCCTTTTACAGGCCT 2 29 1 TTTTAATAGAGAGAAAAGCAGAGCATTAGCT 0 87 1 GAAAAAAGCATTTTGCTATTT 9 0 1 TTGTAGAAGAAAGAAAGGCGTGCGGCATGTA 2 90 0 AATATGCACGAAAAATGGCTGGGTGATTTTA 10 16 1 CGGTCCAAACGAGAAGGGATGTATTCAACGA 9 67 0 AAAAAGCCCTGAAATGGGCTTTTCA 4 4 0 TAGAAAACAGGAAAAGAGAGGGAAGGAGAAA 1 65 1 CTCTATTTGCGAAACAAGCAGAGTAAGTGAT 3 143 1 TATTAAATAAAAAAAAGCCCTGAAATGGGCT 4 15 0 TGATTTACATAAAAAAACCGGCTGGGTCAGC 9 101 0 ATCGTACAAACAAACGGGCTGACCAAAACAT 1 110 1 CAATGGATCAAAAAAAGGAGTGAGACGAC 2 124 1 ATCGTATTTAAAAAAGAGTTGACATATCGGA 3 191 1 GCTGCAAGGAAAAAATAGAAGGCGGCTGATG 8 83 1 ATTAAGTGTCATAAAAAGCTGTTACAACAAG 3 86 0 ********* * MAP Score: 23.6027 Motif 3 TCTTTAGATACACAAAAATATGTGA 0 1 0 CTTAAGGTTTGAGAAATAAAAATGACAGGGCTCG 1 22 1 CAATAGAAAACAGGAAAAGAGAGGGAAGGAGAAA 1 62 1 GAGAGGGAAGGAGAAACAAAGTTGACTTATATCG 1 80 1 CATAGGGCATGAAAAAAAGGCCTGTAAAAGGCCT 2 43 0 CATTGTAGAAGAAAGAAAGGCGTGCGGCATGTAG 2 89 0 GGCAATGGATCAAAAAAAGGAGTGAGACGAC 2 122 1 GTTATTCAAACAAAAAAACAATTGGGCAGCTGAT 3 239 1 TTAATAAAAGCAAGAAAACGCTTGCGAAAAAAAT 4 40 1 AAACGCTTGCGAAAAAAATACGGGAGAAAAAGAA 4 55 1 GCGGAAAGCTGGTGAAAATATGTGAGAAGTTT 5 8 0 GGGATGTGAAGACAAATACAGAGGCGAGGGCAGT 8 26 1 TGCCAAACTGGATGAAAAAAGCTGCAAGGAAAAA 8 63 1 AAGCTGCAAGGAAAAAATAGAAGGCGGCTGATGA 8 81 1 AGCTGATTTACATAAAAAAACCGGCTGGGTCAGC 9 101 0 GACAACATAAGATAAAACAATCGGACATTGATGG 9 238 1 GAAATATGCACGAAAAATGGCTGGGTGATTTTAT 10 14 1 ** ***** * ** MAP Score: 23.528 Motif 4 ATATTTTTGTGTATCTAAAGAAGGGCGGGACAGTT 0 14 1 GCAACTTTTAATAGAGAGAAAAGCAGAGCATTAGC 0 82 1 GGTTTGAGAAATAAAAATGACAGGGCTCGCCGCTA 1 27 1 CTCGCCGCTACAATAGAAAACAGGAAAAGAGAGGG 1 52 1 GAAAACAGGAAAAGAGAGGGAAGGAGAAACAAAGT 1 67 1 GACTTATATCGTACAAACAAACGGGCTGACCAAAA 1 103 1 ACGGGCTGACCAAAACATATCAGGGCAAAGAGGTC 1 123 1 GAACATAGGGCATGAAAAAAAGGCCTGTAAAAGGC 2 45 0 TGCCATTGTAGAAGAAAGAAAGGCGTGCGGCATGT 2 91 0 CAATGGCAATGGATCAAAAAAAGGAGTGAGACGAC 2 118 1 TGCTTGTTTCGCAAATAGAGAAGGAAAAATTATTT 3 128 0 TTATTCAAACAAAAAAACAATTGGGCAGCTGATCG 3 240 1 TGCTTTTATTAAATAAAAAAAAGCCCTGAAATGGG 4 17 0 AAAACGCTTGCGAAAAAAATACGGGAGAAAAAGAA 4 54 1 GATCAGTCATCAAACCATGAAAGGAGGTTGTCTTA 6 14 1 GGATGTGAAGACAAATACAGAGGCGAGGGCAGTTC 8 27 1 AAGCTGCAAGGAAAAAATAGAAGGCGGCTGATGAG 8 81 1 AGCTGATTTACATAAAAAAACCGGCTGGGTCAGCA 9 100 0 TGTAAATCAGCTTGACAAAAATGGCCAAACGCGAT 9 123 1 GAAATATGCACGAAAAATGGCTGGGTGATTTTATG 10 14 1 CTGTTACACTCAATATAAGAAAGCGTTTACAATAA 10 79 1 GAAAGCGTTTACAATAACAAAGGGGGATGTTAG 10 97 1 * * * * *** *** MAP Score: 16.7814 Motif 5 CCCTTCTTTAGATACACAAAAATATGTGA 0 7 0 CCCGTTTGTTTGTACGATATAAGTCAACTTTG 1 96 0 CAGAGAAGCGTATATGCAAAACGTCATATG 2 8 0 TAGAACATAGGGCATGAAAAAAAGGCCTGTAA 2 50 0 ATTGCCATTGTAGAAGAAAGAAAGGCGTGCGG 2 96 0 ACAATGGCAATGGATCAAAAAAAGGAGTGAGA 2 117 1 TTAATAATTTTTGGAGAAATAATTTTTCCTTC 3 112 1 ACATGTTATTCAAACAAAAAAACAATTGGGCA 3 235 1 TTGCTTTTATTAAATAAAAAAAAGCCCTGAAA 4 21 0 TTTTATTTAATAAAAGCAAGAAAACGCTTGCG 4 34 1 CAAGAAAACGCTTGCGAAAAAAATACGGGAGA 4 50 1 GAAGATTTGTCAAAGGAAAAATTTCTTTTTCT 4 79 0 AAAATATTAATAAATGAAAGAAGATTTGTCAA 4 98 0 AATAATAGTTCACAAGATAAAATATTAATAAA 4 116 0 CGTGCCAAACTGGATGAAAAAAGCTGCAAGGA 8 61 1 TGAAAAAAGCTGCAAGGAAAAAATAGAAGGCG 8 75 1 CAAGCTGATTTACATAAAAAAACCGGCTGGGT 9 105 0 AAAAGTTTCCCTCATGCAAAATTATCGCGTTT 9 149 0 GAACTGACAACATAAGATAAAACAATCGGACA 9 233 1 ATTGGAAATATGCACGAAAAATGGCTGGGTGA 10 10 1 ** * ******* MAP Score: 3.28588 Motif 6 GTGTATCTAAAGAAGGGCGGGACAGTTTCT 0 22 1 TTTAATAGAGAGAAAAGCAGAGCATTAGCT 0 88 1 GAGCATTAGCTGAGAGGAGGCCGGTTTTCC 0 107 1 AGAAAACAGGAAAAGAGAGGGAAGGAGAAA 1 66 1 TATATCGTACAAACAAACGGGCTGACCAAA 1 107 1 AGGCCTTTTCAGAGAAGCGTATATGCAAAA 2 19 0 TGTAGAAGAAAGAAAGGCGTGCGGCATGTA 2 90 0 AATGGATCAAAAAAAGGAGTGAGACGAC 2 125 1 AATCGTATTTAAAAAAGAGTTGACATATCG 3 190 1 CTGTTCTAGTAGAGATGAGAGCCTTCGGCG 3 278 0 CGCTTGCGAAAAAAATACGGGAGAAAAAGA 4 58 1 TATTAATAAATGAAAGAAGATTTGTCAAAG 4 96 0 ACTATTATTGAGGAATGAGGTGAAAAGGAG 4 139 1 CATCAAACCATGAAAGGAGGTTGTCTTAG 6 21 1 GGAAAGACAGGTGTATGGGATGTG 8 4 1 AAGGAAAAAATAGAAGGCGGCTGATGAGGA 8 88 1 GTCAGTTCTTAGACATGTGACATTAAATTA 9 211 0 CATTGATGGCAAAGAGGAGGAGAAAT 9 263 1 CACTCAATATAAGAAAGCGTTTACAATAAC 10 85 1 ********** MAP Score: 2.5015