AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions013_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944240942 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yfjN 300 similar to hypothetical proteins #1 yfjM 195 yfjM #2 yfjL 29 alternate gene name: yztA #3 acoA 231 acetoin dehydrogenase E1 component (TPP-dependent alpha subunit) #4 pdhA 300 pyruvate dehydrogenase (E1 alpha subunit) #5 pdhC 114 pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit) #6 odhA 227 2-oxoglutarate dehydrogenase (E1 subunit) #7 yojN 63 similar to nitric-oxide reductase #8 yojM 92 similar to superoxide dismutase #9 yojL 300 similar to cell wall-binding protein #10 bfmBB 22 branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) #11 bfmBAA 73 branched-chain alpha-keto acid dehydrogenase E1 (2-oxoisovalerate dehydrogenase alpha subunit) #12 yqiS 124 similar to phosphate butyryltransferase #13 yqiR 152 similar to transcriptional regulator (sigma-L-dependent) Motif 1 CAAAAAGTTCAAAAGCAAGGCCACTAAGAA 0 86 1 ACCAGAATATAAAAAATAGGGTAGATAATC 0 138 1 CCGTATCCCATAATGAAAGGATTTGATTTT 0 276 1 AGTGCTTGATTCAAAAAAGGCTAACAAAAT 1 14 1 AAAGGCTAACAAAATAAAGGGATTTTTACA 1 29 1 GGATTTACCGAAAATCCAGGTTTATTTTAG 1 69 0 AAAGCTGCGTACAAAAAAGACCCGGATTTA 1 92 0 TAAATTAGAGAAAAGACAGGCTGAGTAAAA 1 119 0 TTATTGTAAGAAAATAATGGTATATTTAGT 1 146 1 ACATATGAGGAAAAGAGTGGGAAC 2 15 1 TACAGCATGCAAAAAAAAGACCGGATATCA 3 57 0 TTACGGGCTCAAAAGACTGGCACACTTCTT 3 169 1 TCACCATTATAAATGCAAGAAGTGTGCCAG 3 185 0 TAACTATCCTACATAAAAGGTTTTGGCAAA 4 159 1 ATGACTGTTTAAAAGAAAGGAAGAGGTGAC 4 275 1 TATTTTGTGAACAATCAAGGTAGAATCAAA 6 84 1 CACTGTTAGAAAAAACAAGGGGGAGACAGT 8 72 1 AGAAAAATAGACAAGAAAGGAGGAGAAACT 9 21 1 ATGCTTTTAAAAATGAATGGCTTTGCCATC 11 38 0 GGAACTTGCATAATAAAAGGCGGAGTCGAA 12 85 1 CGGAGTCGAAACAAGAAAGGTGGTAACAG 12 105 1 TTTCCGCTGGACAATAAAGGAAATGAAAAG 13 29 0 ********** MAP Score: 26.9864 Motif 2 GTATCCCATAATGAAAGGATTTGATTTTTGTT 0 278 1 GGCTAACAAAATAAAGGGATTTTTACACAATT 1 32 1 CTGATTTTCAATAAATGTATTCGCTTTACATT 4 18 0 ACTATCCTACATAAAAGGTTTTGGCAAACTGG 4 161 1 GAGAGGGAAGATGAACGTTTTCCCTCTATTAT 5 25 1 TTTGTTTTTTATAAAGGTTTTTTACTATTTTG 6 59 1 AAAAAAGCCTATAAAAGGCTTTTTGTCATACT 8 15 0 GAGGGTAAAAATGATGGTTTTCTATTGATGAA 9 57 0 GCTTTTAAAAATGAATGGCTTTGCCATCTGCG 11 34 0 AAATGAAAAGATAAAGGGGTTTTCTGAAG 13 7 0 ***** ** *** MAP Score: 16.7726 Motif 3 TTTTTTTGCATGCTGTAAAACGAGACAAATGAATCAG 3 70 1 TAAAAAACCTTTATAAAAAACAAAAAATTTAATCATT 6 46 0 TTGTGTGCCATTTTTGGAAACAAAATACTAGCTGTTT 9 242 1 TATTTCGAAGTTGTAAAAAACTAATACAACACCGCTT 4 102 0 TAAACTGTTTTTTTGCAAAAACAGCTAGTATTTTGTT 9 260 0 TGAATCAGTTTGAGACAAAACGAGACACACGTCTCAA 3 99 1 TATAGGCTTTTTTGTTTATACCAGACAATGATTGACC 8 34 1 CTCTTAAGGGTGCTGTCATACCAGGTATACCGAAACA 12 41 0 CGACTCCGCCTTTTATTATGCAAGTTCCATGCCAGCT 12 76 0 AATTTAATCATTCGAAAAAACAAACGCCAAAAAGCAT 6 21 0 TCTTCTTTATTTGGTGTAAACTAATCCATGTTAAGCG 4 70 1 CGTTCGAAAGTTATTTCAAGATAGTGAATCAATCACT 6 171 1 CTACCTTGATTGTTCACAAAATAGTAAAAAACCTTTA 6 70 0 GACCACACTGTTAGAAAAAACAAGGGGGAGACAGT 8 67 1 TCTTTTACACTTATCGCATGCGAAAGCATTTCTTATC 0 203 0 GTCTAATGACTGTTTAAAAGAAAGGAAGAGGTGACTT 4 270 1 TTTCTCTAATTTATTGTAAGAAAATAATGGTATATTT 1 136 1 GGAAAAAATATTTTGTCAAGAGAAGAAAACGTGGTAA 13 54 1 GAGTAAAAGCTGCGTACAAAAAAGACCCGGATTTACC 1 90 0 GCTTTTGAACTTTTTGGATAAAAAGGATTCCAACCTA 0 65 0 TGTGTCAAAATTATGTAATAAAAACGCTTCCAACGAT 6 133 0 TTTGTTAGCCTTTTTTGAATCAAGCACTGCTG 1 5 0 GGTGTGCAAATTTTTTCATACAAAGGGGTATCGGG 13 127 1 GCGAATACATTTATTGAAAATCAGCGATGAAAACGAT 4 26 1 ACAGGGGCTTTTTTAGTATACTCGTTAATGGAAT 7 39 1 GGCTGAACCTTTATCCCAAATTAAAAACTGACCATGC 0 241 0 ACATAAAAGGTTTTGGCAAACTGGGGATCGGCTAAAA 4 169 1 ** * **** ** * MAP Score: 15.1722 Motif 4 AGAACTCATATGATATTCTATTTAGGTTGGAATCC 0 43 1 GTGGCCTTGCTTTTGAACTTTTTGGATAAAAAGGA 0 75 0 CCCTTTATTTTGTTAGCCTTTTTTGAATCAAGCAC 1 15 0 TTTCGGTAAATCCGGGTCTTTTTTGTACGCAGCTT 1 86 1 AGCCTGTCTTTTCTCTAATTTATTGTAAGAAAATA 1 127 1 TGTAAGAAAATAATGGTATATTTAGTGGAGATATC 1 150 1 CCCTTAATCCTATGCTTTTTGGCGTTTGTTTT 6 7 1 TTTTTTCGAATGATTAAATTTTTTGTTTTTTATAA 6 38 1 TTTATAAAGGTTTTTTACTATTTTGTGAACAATCA 6 66 1 ATCAAGTGATTGATTCACTATCTTGAAATAACTTT 6 177 0 AAAAAGCCTTTTATAGGCTTTTTTGTTTATACCAG 8 23 1 CGAAGCAGTTTCTCCTCCTTTCTTGTCTATTTTTC 9 22 0 CTGTTACCACCTTTCTTGTTTCGACTCC 12 106 0 CTTTATCTTTTCATTTCCTTTATTGTCCAGCGGAA 13 23 1 * * ******** MAP Score: 14.143 Motif 5 AACAGGGCAATTATTTTGCGTTGGTAATATGGAGAACT 0 11 1 TCTACCCTATTTTTTATATTCTGGTTAACTGGCGCTGA 0 125 0 AAAGCATTTCTTATCAATCTATAGTAAATTTTGAAGAT 0 180 0 GCATGGTCAGTTTTTAATTTGGGATAAAGGTTCAGCCG 0 241 1 TCCCTTTATTTTGTTAGCCTTTTTTGAATCAAGCACTG 1 13 0 AAATATACCATTATTTTCTTACAATAAATTAGAGAAAA 1 135 0 ATCCGGTCTTTTTTTTGCATGCTGTAAAACGAGACAAA 3 61 1 TTGACGGTTCTTCTTTATTTGGTGTAAACTAATCCATG 4 62 1 TTGAACTGTATTATTTCGAAGTTGTAAAAAACTAATAC 4 112 0 CCTCCTAGTTTGATTAAGCAATTTTAAAGTTTACATCG 5 77 0 TTGGCGTTTGTTTTTTCGAATGATTAAATTTTTTGTTT 6 28 1 AATGATTAAATTTTTTGTTTTTTATAAAGGTTTTTTAC 6 46 1 TTATAAAGGTTTTTTACTATTTTGTGAACAATCAAGGT 6 67 1 CGTTCGAAAGTTATTTCAAGATAGTGAATCAATCACTT 6 171 1 GTAAAAATGATGGTTTTCTATTGATGAACGAAGCAGTT 9 47 0 AAAACCATCATTTTTACCCTCGCTTAAATAGTTCCTTA 9 68 1 ATGTTAGATGTTTATTTGAAGGTTTAAAGGTCGAACGA 9 138 1 GTTGTGCAAATTATTGCAACGGAATAAATAGGTGTGCA 13 97 1 ** *** * **** MAP Score: 13.4711 Motif 6 GTTGGAATCCTTTTTATCCAAAAAGTTCAAAAGCAAGG 0 68 1 TGTTAGCCTTTTTTGAATCAAGCACTGCTG 1 2 0 AATAAAGGGATTTTTACACAATTCTTGACTAAAATAAA 1 41 1 CCGGGTCTTTTTTGTACGCAGCTTTTACTCAGCCTGTC 1 97 1 TATACCATTATTTTCTTACAATAAATTAGAGAAAAGAC 1 132 0 TATCCGGTCTTTTTTTTGCATGCTGTAAAACGAGACAA 3 60 1 AAATGAATCAGTTTGAGACAAAACGAGACACACGTCTC 3 96 1 TCATCTTCACTTTGGAGACAGTTTGAGACGTGTGTCTC 3 120 0 ACATGGATTAGTTTACACCAAATAAAGAAGAACCGTCA 4 63 0 TGTTGTATTAGTTTTTTACAACTTCGAAATAATACAGT 4 108 1 TATTACATAATTTTGACACAGCGTTCGAAAGTTATTTC 6 150 1 AGGCTTTTTTGTTTATACCAGACAATGATTGACCACAC 8 37 1 CCCCCTTGTTTTTTCTAACAGTGTGGTCAATCATTGTC 8 57 0 AGTTAAACCCTTTTCAAACATTTGGCGCAGCATTTTCA 9 179 0 TTATCGTCAATTTTTCAGCAAGTTAAACCCTTTTCAAA 9 199 0 CAGCTAGTATTTTGTTTCCAAAAATGGCACACAACTGT 9 238 0 TCCTAAACTGTTTTTTTGCAAAAACAGCTAGTATTTTG 9 262 0 GCGGAAAAAATATTTTGTCAAGAGAAGAAAACGTGGTA 13 52 1 TGTGCAAATTTTTTCATACAAAGGGGTATCGGG 13 129 1 **** * *** ** MAP Score: 9.98219 Motif 7 GCTTTTGAACTTTTTGGATAAAAAGGATTCCA 0 70 0 TCAGTTTTTAATTTGGGATAAAGGTTCAGCCG 0 247 1 TTGTTAGCCTTTTTTGAATCAAGCACTGCTG 1 9 0 ATCCGGGTCTTTTTTGTACGCAGCTTTTACTC 1 95 1 TATACCATTATTTTCTTACAATAAATTAGAGA 1 138 0 TCCGGTCTTTTTTTTGCATGCTGTAAAACGAG 3 62 1 ACATAAAAGGTTTTGGCAAACTGGGGATCGGC 4 169 1 GGCGTTTGTTTTTTCGAATGATTAAATTTTTT 6 30 1 TTTTTTACTATTTTGTGAACAATCAAGGTAGA 6 76 1 ACAGGGGCTTTTTTAGTATACTCGTTAATGGA 7 39 1 ATAAAAGGCTTTTTGTCATACTCATTT 8 5 0 TCTTGTCTATTTTTCTAATCAATTCTC 9 5 0 TTGTGTGCCATTTTTGGAAACAAAATACTAGC 9 242 1 CTAAACTGTTTTTTTGCAAAAACAGCTAGTAT 9 266 0 CGACTCCGCCTTTTATTATGCAAGTTCCATGC 12 81 0 GGTGTGCAAATTTTTTCATACAAAGGGGTATC 13 127 1 **** * ***** MAP Score: 8.61355 Motif 8 AAATTTACTATAGATTGATAAGAAATGCTTTCGCA 0 187 1 TGGTCAGTTTTTAATTTGGGATAAAGGTTCAGCCG 0 244 1 AAAATAAACCTGGATTTTCGGTAAATCCGGGTCTT 1 71 1 TTTTCTCTAATTTATTGTAAGAAAATAATGGTATA 1 135 1 AAAATAATGGTATATTTAGTGGAGATATCATATAA 1 156 1 CACGTACATATGAGGAAAAGAGTGGGAAC 2 4 1 CGGTCTTTTTTTTGCATGCTGTAAAACGAGACAAA 3 64 1 GACAAATGAATCAGTTTGAGACAAAACGAGACACA 3 93 1 GTAAAGCGAATACATTTATTGAAAATCAGCGATGA 4 21 1 ACGGTTCTTCTTTATTTGGTGTAAACTAATCCATG 4 65 1 GATTAAATTTTTTGTTTTTTATAAAGGTTTTTTAC 6 49 1 TGATTCTACCTTGATTGTTCACAAAATAGTAAAAA 6 77 0 AAATGAGTATGACAAAAAGCCTTTTATA 8 3 1 AATAGTTCCTTAGACTTTCGAAAAACATATCGTGC 9 94 1 TGAAAAGGGTTTAACTTGCTGAAAAATTGACGATA 9 201 1 AAATACTAGCTGTTTTTGCAAAAAAACAGTTTAGG 9 264 1 TTGGAGAAGCTGCGCTTGCCGCAGATGGCAAAGCC 11 15 1 * ***** * *** MAP Score: 5.48282 Motif 9 TCCCTTTATTTTGTTAGCCTTTTTTGAATCAAGC 1 17 0 GGCTAACAAAATAAAGGGATTTTTACACAATTCT 1 32 1 ATTTTCGGTAAATCCGGGTCTTTTTTGTACGCAG 1 84 1 GCCGGGTGATATCCGGTCTTTTTTTTGCATGCTG 3 51 1 CCCTTAATCCTATGCTTTTTGGCGTTTGTT 6 6 1 TTTTGTTTTTTATAAAGGTTTTTTACTATTTTGT 6 58 1 TAAAATATCGTTGGAAGCGTTTTTATTACATAAT 6 127 1 TATCATCCAGGCCCTTTTGTATTGAGCA 7 4 1 TGTATTGAGCATACAGGGGCTTTTTTAGTATACT 7 27 1 AAAAAAGCCTATAAAAGGCTTTTTGTCATACTCA 8 13 0 CATCAATAGAAAACCATCATTTTTACCCTCGCTT 9 59 1 TGGAAACAAAATACTAGCTGTTTTTGCAAAAAAA 9 256 1 ** *** ***** MAP Score: 3.50011 Motif 10 AATGAATCAGTTTGAGACAAAACGAGACAC 3 97 1 CATCTTCACTTTGGAGACAGTTTGAGACGT 3 127 0 ATCGTAAGCATTGAAAACAGATATATAATA 5 51 0 TAGAATCAAATTGCAAACAGTGGTAAAATA 6 104 1 ATTACATAATTTTGACACAGCGTTCGAAAG 6 151 1 AAAAAACAAGGGGGAGACAGT 8 81 1 TGTGCCATTTTTGGAAACAAAATACTAGCT 9 245 1 AAAAGGCGGAGTCGAAACAAGAAAGGTGGT 12 99 1 AACAAGAAAGGTGGTAACAG 12 114 1 ********** MAP Score: 0.740847