AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions014_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944240971 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ycsG 203 alternate gene name: ycsH; similar to branched chain amino acids transporter #1 ycsI 23 similar to hypothetical proteins #2 ycsJ 43 similar to allophanate hydrolase #3 yerL 300 alternate gene name: yedA; similar to hypothetical proteins #4 ylaO 205 similar to cell-division protein #5 pycA 74 pyruvate carboxylase #6 yngG 250 similar to hydroxymethylglutaryl-CoA lyase #7 yngI 43 similar to long-chain acyl-CoA synthetase #8 yngJ 90 similar to butyryl-CoA dehydrogenase #9 ynzE 270 ynzE #10 yqjC 201 similar to hypothetical proteins #11 accB 155 acetyl-CoA carboxylase subunit (biotin carboxyl carrier subunit) Motif 1 TTGCGCAAAAAATCAGAAAACAGCTCAAAG 0 69 1 GGTCAACATAAAGGAGGAACAATAGATGGA 0 135 1 ATAGATGGAGCAGCAGAAAAAGACAGCAGG 0 156 1 CAGAAAAAGACAGCAGGAAAAAAGCGGGCA 0 169 1 GAGAATTAAAGAGGTGAGAAAG 2 31 1 CATTGATCATAAGCTGGAAATACCGTTGCA 3 56 1 AAATGAGGAGAAGGAGAAACGAAATATTTT 3 148 0 TCTTTTATGAGATGAGAGAAAAATAGCGGT 4 52 0 TGGAAGTTAGAAGCAGGGAAGAGGATGTT 4 186 1 ATCATTAAGAAAGGAGGAACAATGA 7 28 1 CAAAGATGTGAAGGAGGAAACGAT 8 76 1 TTAAAAAACAAAGGTGAGATTCACATGAAT 9 93 1 CCATTATTGGAATCTGAGAAACTAGTACTA 9 147 1 CAGATTGTTTAAGGAGAGAAAATCATGTCT 10 116 0 CTATTAGCGAAAGCAGGGATGAAA 10 187 1 GAATGAGGGAAAAAAGCCCGC 11 1 1 ********** MAP Score: 21.1679 Motif 2 ATGCGCTGACATTTGCGCAAAAAATCAGAAAACAGCTC 0 57 1 TTCAGAACAGAGGTCAACATAAAGGAGGAACAATAGAT 0 124 1 CAATAGATGGAGCAGCAGAAAAAGACAGCAGGAAAAAA 0 154 1 TTGCAAACCTAGAAGGGAATAAAGAATAAAACGCTTTC 3 81 1 CCTTCTCCTCATTTTAGTATAAAATATATAGGGTATTG 3 164 1 CTTTTATGAGATGAGAGAAAAATAGCGGTTATAAAAAA 4 43 0 TTCGGAAGGAATGTGTAAAAAAAGACCGTCTTTTATGA 4 72 0 GATAAATTGTAGTAAAATAAAAAAGATAAATACATAAA 4 136 1 GGAATCGTAAAAGAAGTCAAAAAAAAGGAAGGCGACTT 6 159 1 TCCCAAAATCACTTTTTAAAAAAAGACGACTTAGAAAG 9 26 0 TAAACCGCTGAATTTTTTAAAAAACAAAGGTGAGATTC 9 77 1 AACTAGTACTAAATAAAAATAAAATCGAAGAGAAACAC 9 166 1 AGCATCTCCGAACAGCACAAAAAATAATGTGGCACCTA 9 242 0 TCATGTTTCTATAACGATAAAAAAGCAGGCGCC 10 5 0 GCCCATTCAAAACACGCTAAAATATAGACAGATTGTTT 10 136 0 GAATGAGGGAAAAAAGCCCGCTAAACAAGC 11 2 1 CTAATATGACAGCAACGCAAAAAGCCCGCTTGTTTAGC 11 29 0 TACTTTTAGTAGTAACCTATAAAAAAAGAAATTTCATA 11 110 1 * * ****** * * MAP Score: 18.0458 Motif 3 CCTCTGTTCTGAAATAGCTGTCACTTCAATTC 0 105 0 TGGAGCAGCAGAAAAAGACAGCAGGAAAAAAG 0 161 1 AGACAGCAGGAAAAAAGCGGGCAGCTGGTCAT 0 176 1 GTATTGTTTCGAAAACACAGGCCTGTCTCAAG 3 196 1 GAATGTGTAAAAAAAGACCGTCTTTTATGAGA 4 70 0 GAAAGTCCACGTCAAAGCCGGCGACCAAATCG 6 59 1 AAGCGGAATCGTAAAAGAAGTCAAAAAAAAGG 6 155 1 AGAAGTCAAAAAAAAGGAAGGCGACTTTGTAA 6 170 1 AGGCGACTTTGTAAATGAAGGAGACGTACTGC 6 188 1 GAAATGAGAAGGACGGCTTTCTAAGTC 9 5 1 TCACTTTTTAAAAAAAGACGACTTAGAAAGCC 9 24 0 AAATGAAAACGTAAAACACGTCCTGTACGTGT 9 200 0 CTATAACGATAAAAAAGCAGGCGCC 10 3 0 TTTAAGGAGAGAAAATCATGTCTCAAAAACTG 10 107 0 GAATGAGGGAAAAAAGCCCGCTAAACAAGCG 11 9 1 AAAGCCCGCTAAACAAGCGGGCTTTTTGCGTT 11 22 1 ***** ** *** MAP Score: 13.92 Motif 4 GGCGCCTGCTTTTTTATCGTTATA 10 4 1 TCATTGTTCCTCCTTTCTTAATGATAGG 7 25 0 GACCAGCTGCCCGCTTTTTTCCTGCTGTCT 0 176 0 TTGAGACAGGCCTGTGTTTTCGAAACAATA 3 197 0 GCTTGTTTAGCGGGCTTTTTTCCCTCATTC 11 10 0 GCTAAACAAGCGGGCTTTTTGCGTTGCTGT 11 29 1 TTTATGTTGACCTCTGTTCTGAAATAGCTG 0 117 0 CTTTCTAAGTCGTCTTTTTTTAAAAAGTGA 9 26 1 AAGTCGCCTTCCTTTTTTTTGACTTCTTTT 6 167 0 ATCTATTGTTCCTCCTTTATGTTGACCTCT 0 132 0 CCGCTTTTTTCCTGCTGTCTTTTTCTGCTG 0 166 0 TTTCATCCCTGCTTTCGCTAATAGATA 10 184 0 GTGAATCTCACCTTTGTTTTTTAAAAAATT 9 87 0 TCATAAAAGACGGTCTTTTTTTACACATTC 4 72 1 TTTTTTATAACCGCTATTTTTCTCTCATCT 4 43 1 GCCGCTTTGAGCTGTTTTCTGATTTTTTGC 0 73 0 AATGAGAAGGACGGCTTTCTAAGTCGTCTT 9 12 1 ********** MAP Score: 13.7838 Motif 5 GAAAACTGAACCGCTTTTAAATGACACA 0 8 0 TCAATTCCAGCCGCTTTGAGCTGTTTTCTG 0 82 0 TATTGTTCCTCCTTTATGTTGACCTCTGTT 0 129 0 GACCAGCTGCCCGCTTTTTTCCTGCTGTCT 0 176 0 CTTTCTCACCTCTTTAATTCTCGTTCAT 2 25 0 TTTTTTGAAAGCGTTTTATTCTTTATTCCC 3 95 0 CTGTCTCAAGGCGTTTTGTTGCTTTAAAGG 3 218 1 TTGCTTTAAAGGGCTTGTTTTTGATATGAT 3 236 1 TTAACAGTTTGGGTTTTTTTATAACCGCTA 4 29 1 TTTTTTATAACCGCTATTTTTCTCTCATCT 4 43 1 AAAAAAAGACCGTCTTTTATGAGATGAGAG 4 64 0 GAAGGATATTCCGCTATGATAGATTATATT 5 29 1 ATTTGGTCGCCGGCTTTGACGTGGACTTTC 6 59 0 ACCTCCTGGCCCTTTTCGATTTGGTCGCCG 6 77 0 TTTTACGATTCCGCTTCTATCTGCAACGAT 6 141 0 AAGTCGCCTTCCTTTTTTTTGACTTCTTTT 6 167 0 CTTTCTAAGTCGTCTTTTTTTAAAAAGTGA 9 26 1 GGCGCCTGCTTTTTTATCGTTATAGAA 10 7 1 CTGATGAAAAGCGTTTTGATCGTGATTTTG 10 80 0 CTTGTTTAGCGGGCTTTTTTCCCTCATTC 11 9 0 CGCAAAAAGCCCGCTTGTTTAGCGGGCTTT 11 22 0 ********** MAP Score: 13.5706 Motif 6 TGTGTCATTTAAAAGCGGTTCAGTTTTC 0 6 1 ATCAGAAAACAGCTCAAAGCGGCTGGAATTGA 0 80 1 ACAGAGGTCAACATAAAGGAGGAACAATAGAT 0 130 1 TACTAAAATGAGGAGAAGGAGAAACGAAATAT 3 151 0 ACGGAGAAATATGTGGAGGTGGATCAT 3 283 1 AGATAATGGAAGTTAGAAGCAGGGAAGAGGAT 4 180 1 TGGAAAGTCCACGTCAAAGCCGGCGACCAAAT 6 57 1 CGATCGTTGCAGATAGAAGCGGAATCGTAAAA 6 139 1 AAAGAAGTCAAAAAAAAGGAAGGCGACTTTGT 6 168 1 GCGACTTTGTAAATGAAGGAGACGTACTGCTC 6 190 1 CCACTCAATAATTTGGAGGAAGACC 6 235 1 TGTTACAAAGATGTGAAGGAGGAAACGAT 8 71 1 GAAATGAGAAGGACGGCTTTCTAAG 9 3 1 ATTCACATGAATATGGAGGCGGTGTTTGGACA 9 111 1 AATAAAAATAAAATCGAAGAGAAACACGTACA 9 177 1 TTCTATAACGATAAAAAAGCAGGCGCC 10 5 0 * ********* MAP Score: 12.7981 Motif 7 TACTAAAATGAGGAGAAGGAGAAACGAAAT 3 153 0 TGTTACAAAGATGTGAAGGAGGAAACGAT 8 71 1 GAGGAACAATAGATGGAGCAGCAGAAAAAG 0 148 1 AAGTGTGTACAGGGGAAGGATATTCCGCTA 5 15 1 TATAAGTGGAGCAATTAAACAAA 1 3 1 GAAATGAGAAGGACGGCTTTCTA 9 3 1 CCACTCAATAATTTGGAGGAAGACC 6 235 1 TCATTTATGGAGATGGAGCCCATGCGCTGA 0 36 1 TCATTAAGAAAGGAGGAACAATGA 7 29 1 GTCAACATAAAGGAGGAACAATAGATGGAG 0 136 1 ACGGAGAAATATGTGGAGGTGGATCAT 3 283 1 CATTCGGGTAAGGGGGAGAAAAGT 5 60 1 ATTCACATGAATATGGAGGCGGTGTTTGGA 9 111 1 GCGACTTTGTAAATGAAGGAGACGTACTGC 6 190 1 CTGAGAGTACAGTTGAAAGAATAAAAACTC 10 49 1 AATAAAATCGAAGAGAAACACGTACAGGAC 9 183 1 AAGTCAAAAAAAAGGAAGGCGACTTTGTAA 6 172 1 ********** MAP Score: 10.7569 Motif 8 AGCTATTTCAGAACAGAGGTCAACATAAAGGAGGAACAATA 0 118 1 AGGAGGAACAATAGATGGAGCAGCAGAAAAAGACAGCAGGA 0 146 1 ATACCGTTGCAAACCTAGAAGGGAATAAAGAATAAAACGCT 3 75 1 GGAATAAAGAATAAAACGCTTTCAAAAAATAATTAAAGTAA 3 96 1 AATAATTAAAGTAAAAATATTCAGAAAAATATTTCGTTTCT 3 123 1 TTTTATACTAAAATGAGGAGAAGGAGAAACGAAATATTTTT 3 147 0 GATCAGTATTATATGACTTAACGGAGAAATATGTGGAGGTG 3 263 1 AGATGAGAGAAAAATAGCGGTTATAAAAAAACCCAAACTGT 4 32 0 ATACGATTCGGAAGGAATGTGTAAAAAAAGACCGTCTTTTA 4 75 0 ATAAATTGTAGTAAAATAAAAAAGATAAATACATAAAAACC 4 137 1 AAGCGGAATCGTAAAAGAAGTCAAAAAAAAGGAAGGCGACT 6 155 1 TCCTGTCCCAAAATCACTTTTTAAAAAAAGACGACTTAGAA 9 28 0 GTAAACCGCTGAATTTTTTAAAAAACAAAGGTGAGATTCAC 9 76 1 TGGAATCTGAGAAACTAGTACTAAATAAAAATAAAATCGAA 9 154 1 ATTCCTGAGAGTACAGTTGAAAGAATAAAAACTCCCAAAAT 10 45 1 TGTACTTTTAGTAGTAACCTATAAAAAAAGAAATTTCATAC 11 108 1 *** * * * *** * MAP Score: 10.1519 Motif 9 CGCCTTCCTTTTTTTTGACTTCTTTTACGATTCCGC 6 157 0 TTGATCGTGATTTTGGGAGTTTTTATTCTTTCAACT 10 59 0 TCAGTTTTAATTTTCAGACTTTTCTTGTCAGGGAAT 8 11 1 ACAGGACGTGTTTTACGTTTTCATTTCTAGTCTGGT 9 206 1 TATCTATGGTTTTTATGTATTTATCTTTTTTATTTT 4 149 0 CTTATTAACAGTTTGGGTTTTTTTATAACCGCTATT 4 25 1 TTTCATCAGTTTTTGAGACATGATTTTCTCTCCTTA 10 101 1 CTGTTAATAAGTTTGAGTTTTATCAT 4 0 0 TGCCACATTATTTTTTGTGCTGTTCGGAGATGCT 9 246 1 AAGGACGGCTTTCTAAGTCGTCTTTTTTTAAAAAGT 9 18 1 CTTTGAGCTGTTTTCTGATTTTTTGCGCAAATGTCA 0 63 0 GCTGCCCGCTTTTTTCCTGCTGTCTTTTTCTGCTGC 0 165 0 TAACCGCTATTTTTCTCTCATCTCATAAAAGACGGT 4 50 1 AACGAAATATTTTTCTGAATATTTTTACTTTAATTA 3 125 0 CTCCACATATTTCTCCGTTAAGTCATATAATACTGA 3 265 0 **** ** * ** * MAP Score: 8.59734 Motif 10 GCCGCTTTGAGCTGTTTTCTGATTTTTTGCGC 0 71 0 TTTTCCTGCTGTCTTTTTCTGCTGCTCCATCT 0 158 0 GCTTTAAAGGGCTTGTTTTTGATATGATCAGT 3 238 1 AACAGTTTGGGTTTTTTTATAACCGCTATTTT 4 31 1 ATAAAAGACGGTCTTTTTTTACACATTCCTTC 4 74 1 CTACCTCCTGGCCCTTTTCGATTTGGTCGCCG 6 77 0 CCAGGAGGTAGCCATTTTGGAATCGATGAAAA 6 98 1 TTTCTAAGTCGTCTTTTTTTAAAAAGTGATTT 9 27 1 TTTTTAAAAAGTGATTTTGGGACAGGAAACGA 9 42 1 GAATATGGAGGCGGTGTTTGGACATTTACCAT 9 119 1 TTCATTTCTAGTCTGGTTAGGTGCCACATTAT 9 225 1 ATTATTTTTTGTGCTGTTCGGAGATGCT 9 252 1 CGTTTTGATCGTGATTTTGGGAGTTTTTATTC 10 67 0 CTATATTTTAGCGTGTTTTGAATGGGCGGACA 10 147 1 *** **** *** MAP Score: 6.53551 Motif 11 CTCCATCTATTGTTCCTCCTTTATGTTGACCT 0 134 0 CCTGCTGTCTTTTTCTGCTGCTCCATCTATTG 0 154 0 TGCCCGCTTTTTTCCTGCTGTCTTTTTCTGCT 0 167 0 CTTTCTCACCTCTTTAATTCTCG 2 30 0 TAACAAAGTATTCCCGGCCATTCAAGCGATGA 3 22 1 CGTTTTATTCTTTATTCCCTTCTAGGTTTGCA 3 82 0 TCTGAATATTTTTACTTTAATTATTTTTTGAA 3 116 0 TAACCGCTATTTTTCTCTCATCTCATAAAAGA 4 50 1 TCTTTTTTATTTTACTACAATTTATCAAACGA 4 130 0 TTTTTATGTATTTATCTTTTTTATTTTACTAC 4 144 0 ACTTTTCTCCCCCTTACCCGAATGG 5 59 0 TTTCCACAGGTTTCCTGCCATTTGTATGCTAA 6 31 0 ATGTAAACGCTTTCCTATCATTAAGAAAGGAG 7 12 1 TCATTGTTCCTCCTTTCTTAATGATA 7 27 0 CAGTTTTAATTTTCAGACTTTTCTTGTCAGGG 8 12 1 AATTCAGCGGTTTACCATCGTTTCCTGTCCCA 9 59 0 TGTTTGGACATTTACCATTATTGGAATCTGAG 9 133 1 GGCGCCTGCTTTTTTATCGTTATAGAAACAT 10 9 1 TGAGACATGATTTTCTCTCCTTAAACAATCTG 10 114 1 TAGCGGGCTTTTTTCCCTCATTC 11 1 0 ****** ** ** MAP Score: 3.62266