AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions015_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241021
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	pabB	166	para-aminobenzoate synthase (subunit A)
#1	guaA	232	GMP synthetase
#2	trpE	215	anthranilate synthase

Motif 1
CGGTTCGCCGGGAGTTTTTTTATATTTCGTGC	0	26	1
AGAAAATAGAGGAATGATACAA          	0	154	1
TCGGCGCTATGGAATGATTCGAGAGAGTTATG	1	17	1
ATGATTCGAGAGAGTTATGGGAAAATTTAATT	1	30	1
ACGTGTTGTTAGAATTAGTGAATATTATCGGA	1	90	1
GCCGTTTGCCGGAGTCAGGCCAACTCGCTCCC	1	126	0
GAAATACACAAGAGTGTGTATAAAGCAATTAG	2	28	1
TAAAGCAATTAGAATGAGTTGAGTTAGAGAAT	2	48	1
AGGGTAGCAGAGAATGAGTTTAGTTGAGCTGA	2	80	1
ATGAGAAGATGGCATGAGAGGATAAAATACTA	2	167	0
TATGGCAAGGAGAATGAGAAGATGGCATGAGA	2	180	0
CTTGCCATAAGGAGTGAGAGCA          	2	203	1
          *********  *
MAP Score: 17.4468

Motif 2
CACGAAATATAAAAAAACTCCCGGCGAACCGGG	0	24	0
TTCTCTTCCAAGAATAACATTCGTCGCAGACAT	0	70	0
AAAACAAGTAAAAAAGAAAATAGAGGAATGATA	0	140	1
TCGGCGCTATGGAATGATTCGAGAGAGTTATGG	1	17	1
ACGTGTTGTTAGAATTAGTGAATATTATCGGAG	1	90	1
TTTTTGACACAGAAAAAAACGAGGACAGATATG	1	184	0
AGAACAGCTTAGAAATACACAAGAGTGTGTATA	2	17	1
TAAAGCAATTAGAATGAGTTGAGTTAGAGAATA	2	48	1
AGGGTAGCAGAGAATGAGTTTAGTTGAGCTGAG	2	80	1
TAAACCCAAAAGAAAGACTTCTTTTGGGTAGAA	2	125	0
TATGGCAAGGAGAATGAGAAGATGGCATGAGAG	2	179	0
          ******* *  **
MAP Score: 8.45055

Motif 3
TTATTCTTGGAAGAGAAATTCACTTTTTTC	0	86	1
AAACAAGTAAAAAAGAAAATAGAGGAATGA	0	141	1
CGAGAGAGTTATGGGAAAATTTAATTAAAA	1	36	1
AAATTTAATTAAAAGAAGATGGTCTTGACC	1	52	1
TATTCTACCCAAAAGAAGTCTTTCTTTTGG	2	123	1
AGAAGATGGCATGAGAGGATAAAATACTAT	2	166	0
GGCAAGGAGAATGAGAAGATGGCATGAGAG	2	179	0
          **********
MAP Score: 5.01836

Motif 4
          TACGATAAGAACAGCTTAGAA	2	0	1
GTGTGTATAAAGCAATTAGAATGAGTTGAGT	2	41	1
TGTTTATTCTACCCAAAAGAAGTCTTTCTTT	2	119	1
TAACAAATAAACCCAAAAGAAAGACTTCTTT	2	134	0
TCATTCTCCTTGCCATAAGGAGTGAGAGCA 	2	195	1
          * *********
MAP Score: 0.232793