AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions017_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944241115 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yfhR 81 alternate gene name: ygaA; similar to glucose 1-dehydrogenase #1 yjmC 104 similar to malate dehydrogenase #2 yjmE 24 similar to D-mannonate hydrolase #3 ykuF 142 similar to glucose 1-dehydrogenase #4 ymfF 274 ymfF #5 ymfG 64 similar to processing protease #6 ymfH 82 similar to processing protease #7 ymfI 54 similar to 3-oxoacyl- acyl-carrier protein reductase #8 yqjP 300 yqjP #9 yxbG 116 alternate gene name: yxaU; similar to glucose 1-dehydrogenase #10 yxnA 130 similar to glucose 1-dehydrogenase Motif 1 AATAATGGCAAGAACTTTAAAGGGGGTCTTCTGTT 0 5 0 TAAAAGAACTATACGCTACAAGGAGATGAGGAAAA 0 56 1 ATTTGTAAATAAAATGTGTTTGTAGGGGTTTCGCTTGGAG 1 38 1 GAGTGCCCAAAAAACTGAAAAGGAAGGAGGCACTTGC 1 77 1 ATGACTGAATCCGGAGGTGCGAGC 2 1 1 AACTGTACCTATACAGCATGCGGAGGTTATTGTTTCCTTA 4 47 1 ACTAATTAAGAAATGAACGAAGGAGGTTCCATATTTCATA 4 157 1 GACTTATTTCTTAAAAGGGACGGAGGGTGCATCTTGATCA 6 13 1 CAGAAAAACACCCCTCACACTGGAGGGATGTTTTGT 7 6 0 TAGGTTTTCCTAACCGCGACTTGAGGGCAGGTTCTACAAA 8 32 1 GGGCCGCAACACCTTTCAGCCGGGGGTATCGCTCTCTTAG 8 77 1 AAGATGAATTAGAAATTGTTGGGAGGTTTGTATGT 9 5 0 GCGGGAAGACAAATAGAAAAAGGAGGTCTCGTATC 9 91 1 TAAGTCGCTCTACCATACCTAGGAGGGAATGTTTTA 10 6 0 TTTTTGTACATTACCCCATCCGGAAGGGTCTTACCCCTTT 10 77 0 AATGTACAAAAACAGCGTCTAGGAGGGATCTCTCA 10 105 1 * ** ****** * MAP Score: 13.1297 Motif 2 AGAACTTTAAAGGGGGTCTTCTGTT 0 3 0 TGTGTTTGTAGGGGTTTCGCTTGGAGAGTGCC 1 52 1 TGAAAAGGAAGGAGGCACTTGC 1 92 1 AAACTCTATTAAAGGTTGGTTTGAA 3 3 0 TACAGCATGCGGAGGTTATTGTTTCCTTATAA 4 58 1 CCTCACACTGGAGGGATGTTTTGT 7 2 0 CCTCCAGTGTGAGGGGTGTTTTTCTGCGGAAA 7 20 1 ACCGCGACTTGAGGGCAGGTTCTACAAACAAG 8 44 1 CTTTCAGCCGGGGGTATCGCTCTCTTAGGCCA 8 89 1 GCTTTTTCAAAAAGGTTTGTTCTCATTCTGCA 8 214 1 GAAATTGTTGGGAGGTTTGTATGT 9 2 0 ATAGAAAAAGGAGGTCTCGTATC 9 103 1 CCATACCTAGGAGGGAATGTTTTA 10 2 0 TTAACAATCACAGGGTTCTTTTTTATATTATA 10 46 0 ACCCCATCCGGAAGGGTCTTACCCCTTTTAAC 10 73 0 CCTTCCGGATGGGGTAATGTACAAAAACAGCG 10 90 1 CAGCGTCTAGGAGGGATCTCTCA 10 117 1 ***** **** * MAP Score: 11.4267 Motif 3 GCAAGTGCCTCCTTCCTTTTCAGTTTTTT 1 85 0 GTTTATCCCTCCAATTGTGAATGAT 3 127 0 CCAGCCGTCTTTTTTTGCGCTTT 4 3 1 AAGAATCCAAGCCGTCTATGATGATAAAAT 5 13 1 AGATGCACCCTCCGTCCCTTTTAAGAAATA 6 17 0 ACAAAACATCCCTCCAGTGTGAGGGGTG 7 8 1 TGTAGAACCTGCCCTCAAGTCGCGGTTAGG 8 40 0 AGGTGTTGCGGCCCGCTTGTTTGTAGAACC 8 61 0 GCCGGGGGTATCGCTCTCTTAGGCCATTGC 8 95 1 CCTCGTCATAGCGTTCCAATGGTTCTCGTT 8 138 1 TAGCTTTTTCTCGGTCTTGTGTCATTATTG 8 244 0 CCTTTCGCTCCTTGTCTTCATTCA 8 286 0 CTATTTGTCTTCCCGCTATGTGCAGTGATA 9 77 0 GATACGAGACCTCCTTTTTCTATTTGT 9 99 0 TAAAACATTCCCTCCTAGGTATGGTAGA 10 8 1 TGAGAGATCCCTCCTAGACGCTGTTTT 10 113 0 ********** MAP Score: 10.3295 Motif 4 ATGACTGAATCCGGAGGTGCGAGC 2 1 1 AACTGTACCTATACAGCATGCGGAGGTTATTGTTTCC 4 47 1 ACAAAACATCCCTCCAGTGTGAGGGGTGTTTTTCT 7 8 1 GAGGGGTGTTTTTCTGCGGAAAGAAGGAAAGAGG 7 30 1 ACCTAAACGTTTCCCGCGTTACGGGGA 8 0 0 TAGGTTTTCCTAACCGCGACTTGAGGGCAGGTTCTAC 8 32 1 AAGAGAGCGATACCCCCGGCTGAAAGGTGTTGCGGCC 8 78 0 CGCATGTTTATCACTGCACATAGCGGGAAGACAAATA 9 69 1 TTTTTGTACATTACCCCATCCGGAAGGGTCTTACCCC 10 80 0 TAATGTACAAAAACAGCGTCTAGGAGGGATCTCTCA 10 104 1 * * *** ***** MAP Score: 9.22411 Motif 5 ATACATACTAATTAAGAAATGAACGAAGGAGGT 4 151 1 ATGATAGAATATTATTGAATGAATAATCATTCA 3 102 1 ATTTGAGTTCATTAACATATGAAATATGGAACC 4 181 0 CTAAAATATGAATAATGAATGAAGACAAGGAGC 8 271 1 TGATCAAACCAATCGAATATGAACAGCTTCAGG 6 47 1 TTGTGTCATTATTGCAGAATGAGAACAAACCTT 8 225 0 CTTGTCCGCCATTGCATAATGAACAACAAACTA 8 169 0 ATCTGATAAAAATCTCATATGAGCATGTGCTGA 3 53 1 ATTTAAAATAATTTGTAAATAAAATGTGTTTGT 1 28 1 CAATATAATATAAAGAATATTTAA 1 1 1 TTATCCCTCCAATTGTGAATGATTATTCATTCA 3 117 0 *** ******* MAP Score: 7.42568 Motif 6 AAGAACTTTAAAGGGGGTCTTCTGTT 0 3 0 AAACTCTATTAAAGGTTGGTTTGAA 3 2 0 TGTGCTGACAGAGGCAGGGATATAATGATAGAA 3 78 1 GTGCGGTTAAACGACGTGCTTTGATTTGAGTTC 4 204 0 TTAAAAATAAGCGAGACGGTTTTGAATTTTTCT 4 250 0 CCTCACACTGGAGGGATGTTTTGT 7 1 0 CCTCCAGTGTGAGGGGTGTTTTTCTGCGGAAAG 7 20 1 ACCTGCCCTCAAGTCGCGGTTAGGAAAACCTAA 8 31 0 ACCGCGACTTGAGGGCAGGTTCTACAAACAAGC 8 44 1 GAAAGGTGTTGCGGCCCGCTTGTTTGTAGAACC 8 61 0 GCTTTTTCAAAAAGGTTTGTTCTCATTCTGCAA 8 214 1 CGAGAAAAGAAAGGCCAGCATATGTTAAGATGA 9 38 0 CCATACCTAGGAGGGAATGTTTTA 10 1 0 TTTAACAATCACAGGGTTCTTTTTTATATTATA 10 46 0 ***** **** * MAP Score: 6.39199 Motif 7 TTGTTTGTGGAAATAAAAGAACTATACGCTA 0 43 1 GAGAGTGCCCAAAAAACTGAAAAGGAAGGAG 1 75 1 GGCAGGGATATAATGATAGAATATTATTGAA 3 90 1 GATAGAATATTATTGAATGAATAATCATTCA 3 104 1 GTAGGATTTATAAGGAAACAATAACCTCCGC 4 66 0 ACATACTAATTAAGAAATGAACGAAGGAGGT 4 153 1 TTGAGTTCATTAACATATGAAATATGGAACC 4 181 0 GCACACATTGTAAAAACAGAAAAATTCAAAA 4 233 1 CATTCTGCAATAATGACACAAGACCGAGAAA 8 237 1 GAGAAAAAGCTAAAATATGAATAATGAATGA 8 262 1 AAAATATGAATAATGAATGAAGACAAGGAGC 8 273 1 *** ******* MAP Score: 6.01332 Motif 8 AGTTCTTTTATTTCCACAAACAATAATGGCAAGAA 0 31 0 ATGACTGAATCCGGAGGTGCGAGC 2 0 1 GAGTTTTTCTATTATATCATCTGTATCTGATAAAA 3 29 1 ATGATAGAATATTATTGAATGAATAATCATTCACA 3 102 1 CTTTCATGTAATTATAGCAACTGTAGGATTTATAA 4 84 0 TTATGAACAATTTTCAGAATCCGCAGAAACACTCT 4 117 0 TCCTTCGTTCATTTCTTAATTAGTATGTATTATGA 4 146 0 AACCGCACACATTGTAAAAACAGAAAAATTCAAAA 4 229 1 TACGACTTATTTCTTAAAAGGGACGGAGGGTGC 6 8 1 CTTGTCCGCCATTGCATAATGAACAACAAACTAAA 8 167 0 TTGTGTCATTATTGCAGAATGAGAACAAACCTTTT 8 223 0 GTTTTTGTACATTACCCCATCCGGAAGGGTCTTAC 10 83 0 *** * **** * * MAP Score: 5.14601 Motif 9 GTGGAAATAAAAGAACTATACGCTACAAGGAGATGAGGAAAA 0 49 1 AATAATTTGTAAATAAAATGTGTTTGTAGGGGTTTCGCTTGGAG 1 34 1 GAGTGCCCAAAAAACTGAAAAGGAAGGAGGCACTTGC 1 77 1 AATACATACTAATTAAGAAATGAACGAAGGAGGTTCCATATTTC 4 150 1 AGGTTTTCCTAACCGCGACTTGAGGGCAGGTTCTACAAACAAGC 8 33 1 CAACAAACTAAAACGAGAACCATTGGAACGCTATGACGAGGAAT 8 135 0 CTAAAATATGAATAATGAATGAAGACAAGGAGCGAAAGG 8 271 1 TGTTAAGATGAATTAGAAATTGTTGGGAGGTTTGTATGT 9 5 0 ** ** * * *** * MAP Score: 4.98187 Motif 10 AACTTTAAAGGGGGTCTTCTGTT 0 1 0 ATGTGTTTGTAGGGGTTTCGCTTGGAGAGTGC 1 51 1 ACCTTTAATAGAGTTTTTCTATTATATCATCT 3 19 1 ACAGCATGCGGAGGTTATTGTTTCCTTATAAA 4 59 1 TTACATGAAAGAGTGTTTCTGCGGATTCTGAA 4 108 1 AGACGGTTTTGAATTTTTCTGTTTTTACAATG 4 238 0 CCTCACACTGGAGGGATGTTTTGT 7 2 0 CCAGTGTGAGGGGTGTTTTTCTGCGGAAAGAA 7 23 1 ACCGCGACTTGAGGGCAGGTTCTACAAACAAG 8 44 1 CCTTTCAGCCGGGGGTATCGCTCTCTTAGGCC 8 88 1 CTTTTTCAAAAAGGTTTGTTCTCATTCTGCAA 8 215 1 GAAATTGTTGGGAGGTTTGTATGT 9 2 0 ATAGAAAAAGGAGGTCTCGTATC 9 103 1 CCATACCTAGGAGGGAATGTTTTA 10 2 0 AACAATCACAGGGTTCTTTTTTATATTATATA 10 44 0 CCTTCCGGATGGGGTAATGTACAAAAACAGCG 10 90 1 ACAGCGTCTAGGAGGGATCTCTCA 10 116 1 ***** **** * MAP Score: 4.79128 Motif 11 GCAATGGCGGACAAGCTAATGTCAATAGCT 8 187 1 ATAATGAACAACAAACTAAAACGAGAACCA 8 157 0 AAGACCGAGAAAAAGCTAAAATATGAATAA 8 256 1 ACCTTTTTGAAAAAGCTATTGACATTAGCT 8 200 0 CTCTGTCAGCACATGCTCATATGAGATTTT 3 61 0 TGTTCATAATACATACTAATTAAGAAATGA 4 143 1 CGAAACCCCTACAAACACATTTTATTTACA 1 41 0 GATATAATAGAAAAACTCTATTAAAGGTTG 3 17 0 CGCGGTTAGGAAAACCTAAACGTTTCCCGC 8 20 0 AGAGTGCCCAAAAAACTGAAAAGGAAGGAG 1 76 1 GTATCTGATAAAAATCTCATATGAGCATGT 3 51 1 TTTTATTTCCACAAACAATAATGGCAAGAA 0 31 0 CACACATTGTAAAAACAGAAAAATTCAAAA 4 234 1 ********** MAP Score: 3.16181 Motif 12 AACTTTAAAGGGGGTCTTCTGTT 0 1 0 TGTGTTTGTAGGGGTTTCGCTTGGAGAGTGCC 1 52 1 CAGCATGCGGAGGTTATTGTTTCCTTATAAAT 4 60 1 TCCAGTGTGAGGGGTGTTTTTCTGCGGAAAGA 7 22 1 CTTTCAGCCGGGGGTATCGCTCTCTTAGGCCA 8 89 1 AGCGTTCCAATGGTTCTCGTTTTAGTTTGTTG 8 147 1 ATAGAAAAAGGAGGTCTCGTATC 9 103 1 AACAATCACAGGGTTCTTTTTTATATTATATA 10 44 0 CCTTCCGGATGGGGTAATGTACAAAAACAGCG 10 90 1 ***** **** * MAP Score: 2.97249 Motif 13 TTCAAACCAACCTTTAATAGAG 3 2 1 GCAAAGAATCCAAGCCGTCTA 5 1 1 GCATCTTGATCAAACCAATCGAATATGAAC 6 41 1 ACAAAACATCCCTCCAGTGTG 7 1 1 ACATACAAACCTCCCAACAAT 9 1 1 ********** MAP Score: 0.600812