AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions018_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241176
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	ydaD	207	similar to alcohol dehydrogenase
#1	citA	108	citrate synthase I
#2	yhdF	73	similar to glucose 1-dehydrogenase
#3	yoxD	150	similar to 3-oxoacyl- acyl-carrier protein reductase
#4	ytkK	126	similar to 3-oxoacyl- acyl-carrier protein reductase
#5	yuxG	137	alternate gene name: yulA; similar to sorbitol-6-phosphate 2-dehydrogenase
#6	yvaG	300	similar to 3-oxoacyl- acyl-carrier protein reductase

Motif 1
AATGATTAACATGCTTTCTAGAAGATTTCAG	0	32	0
CAGCAACCAACCCCCTTTTTGAGTTAATTTC	0	63	1
GATGATTCTCCTCCTTTGTTTTCATGTCTAT	0	186	0
TATTCCCCCTATCCTTTTCTGTTATTATAGT	1	84	0
   ATGTTCACTCCTTTTCTTATGTCATTAC	3	7	1
ATTACCCTGTATCCGTTTTTTTAATCAGAAG	3	33	1
   TTGAAGCACCCTTTCTTTGTTTACATAT	3	132	0
TCTGTACAGGCAGCTTTTTTTGTATGCCAAA	4	14	1
AGAAGAAGAAACACTTTATTGAAAGCGGCGA	4	83	1
AGCAGATATGCCGCTTTCTCGTTTCA     	5	5	0
GGCATATCTGCTGCTTTCTTTTTTTGTTAAA	5	24	1
TTCCTCCATACCCTTTTATTTGTATCCGTTT	5	108	0
TTAAGAGGTTCTGCTTTATTGTCAGTATGTA	6	125	0
TTAAGAGGTTCTGCTTTATTTTTTCTCCAAA	6	152	1
 TATTCATCCCTCCGTTTTTGATTCCTCTTA	6	280	0
          ******* ***
MAP Score: 19.2298

Motif 2
  GATGATTCTCCTCCTTTGTTTTCATGTCTATT	0	185	0
CCCTTTAAAATATTGATTATTTTTTAAATATTAT	1	46	1
GCAGCAGATATGCCGCTTTCTCGTTTCA      	5	4	0
GCGGCATATCTGCTGCTTTCTTTTTTTGTTAAAA	5	22	1
TTTGAATCGTTTTTGTTTATTTTTGCTTTTTAAC	5	49	0
TATATATGATTTCTGTTTGTTTTTGAATCGTTTT	5	70	0
TCTTAAGAGGTTCTGCTTTATTGTCAGTATGTAT	6	124	0
TCTTAAGAGGTTCTGCTTTATTTTTTCTCCAAAC	6	150	1
ATCCCTCCGTTTTTGATTCCTCTTATTTATTGAC	6	271	0
          * *** **  ****
MAP Score: 14.2313

Motif 3
GTACACAACAAATAGACATGAAAACAAAGGAGGAGAAT	0	175	1
TCAATATTTTAAAGGGAATTAATTAAAAATATTAATCA	1	24	0
ATATTTACTATAATAACAGAAAAGGATAGGGGGAATAC	1	78	1
CACACGACAGAAATGAATAAACGCCAAAATATG     	2	5	0
TCTGATTAAAAAAACGGATACAGGGTAATGACATAAGA	3	24	0
TCCGTTTTTTTAATCAGAAGAAATGATATTTACACAGT	3	44	1
TTTGTATGCCAAAGTGTAAAAAGTGATATTGCAAGCCT	4	32	1
CTTTTATAGTAAAGTAGAAGAAGAAACACTTTATTGAA	4	68	1
        TGAAACGAGAAAGCGGCATATCTGCTGCTT	5	2	1
CTTTTTAACAAAAAAAGAAAGCAGCAGATATGCCGCTT	5	20	0
TTTTTTTGTTAAAAAGCAAAAATAAACAAAAACGATTC	5	42	1
AAATAAACAAAAACGATTCAAAAACAAACAGAAATCAT	5	61	1
AAACAAACAGAAATCATATATAATGAAAACGGATACAA	5	82	1
GATACAAATAAAAGGGTATGGAGGAATATCAAAT    	5	113	1
AAGATGAGTGAAACCATAAATATGCAGGCTACGCTCGT	6	33	1
TTTTTTCTCCAAACCACAGGCACCAAAAAGTGCGTACT	6	170	1
AATCAGTATGAAACAGCTGGGATTGAAATGGAAGTACG	6	202	0
TTCTGTCAATAAATAAGAGGAATCAAAAACGGAGGGAT	6	267	1
          ***  * * * *  ** *
MAP Score: 13.9893

Motif 4
AATAGACATGAAAACAAAGGAGGAGAATCATC  	0	185	1
AATTAAAAATATTAATCAGAGGGAGAATAGAA  	1	8	0
AAAATAATCAATATTTTAAAGGGAATTAATTAAA	1	35	0
ATTTACTATAATAACAGAAAAGGATAGGGGGAAT	1	80	1
CAGGGTAATGACATAAGAAAAGGAGTGAACAT  	3	8	0
ATTTCTTCTGATTAAAAAAACGGATACAGGGTAA	3	34	0
CATCCAATACGCAAATCAAACGAACTGTGTAAAT	3	71	0
GCCTTTTATAGTAAAGTAGAAGAAGAAACACTTT	4	66	1
TAACAAAAAAAGAAAGCAGCAGATATGCCGCTTT	5	19	0
TTTTTTGTTAAAAAGCAAAAATAAACAAAAACGA	5	43	1
AAAACGATTCAAAAACAAACAGAAATCATATATA	5	70	1
GAAATCATATATAATGAAAACGGATACAAATAAA	5	91	1
GAAAACGGATACAAATAAAAGGGTATGGAGGAAT	5	106	1
ATACATACTGACAATAAAGCAGAACCTCTTAAGA	6	124	1
GTTTGGAGAAAAAATAAAGCAGAACCTCTTAAGA	6	150	0
ATTTCTGTCAATAAATAAGAGGAATCAAAAACGG	6	265	1
          * **   *******
MAP Score: 11.6173

Motif 5
TTTCTGATAAAGCAATGCGAAGGTGCCAAGCCATG	0	119	1
CAAATAGACATGAAAACAAAGGAGGAGAATCATC 	0	183	1
CTATAATAACAGAAAAGGATAGGGGGAATACAA  	1	85	1
ACCACACGACAGAAATGAATAAACGCCAAAATATG	2	10	0
CTTCTGATTAAAAAAACGGATACAGGGTAATGACA	3	29	0
GTATTGTACTTATAATGTGATATCGTACATATGTA	3	104	1
ATCGTACATATGTAAACAAAGAAAGGGTGCTTCAA	3	125	1
TGCCAAAGTGTAAAAAGTGATATTGCAAGCCTTTT	4	38	1
AAAAAGCAAAAATAAACAAAAACGATTCAAAAACA	5	52	1
ACGATTCAAAAACAAACAGAAATCATATATAATGA	5	73	1
TCATATATAATGAAAACGGATACAAATAAAAGGGT	5	95	1
CAGCTGGGATTGAAATGGAAGTACGCACTTTTTGG	6	192	0
AATAAATAAGAGGAATCAAAAACGGAGGGATGAAT	6	274	1
          ** **** ** *  *
MAP Score: 0.994359