AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions018_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944241193 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ydaD 207 similar to alcohol dehydrogenase #1 citA 108 citrate synthase I #2 yhdF 73 similar to glucose 1-dehydrogenase #3 yoxD 150 similar to 3-oxoacyl- acyl-carrier protein reductase #4 ytkK 126 similar to 3-oxoacyl- acyl-carrier protein reductase #5 argG 169 argininosuccinate synthase #6 moaB 84 molybdopterin precursor biosynthesis protein B #7 ackA 300 acetate kinase #8 yuxG 137 alternate gene name: yulA; similar to sorbitol-6-phosphate 2-dehydrogenase #9 tlpB 113 methyl-accepting chemotaxis protein #10 mcpA 125 methyl-accepting chemotaxis protein #11 tlpA 176 methyl-accepting chemotaxis protein #12 mcpB 157 methyl-accepting chemotaxis protein #13 yvaG 300 similar to 3-oxoacyl- acyl-carrier protein reductase Motif 1 AATAGACATGAAAACAAAGGAGGAGAATCATC 0 185 1 TATTAGATTTATCTTAAAGGAGGAGTCAACGAGA 9 89 1 TTTTAACAAAAAAAGAAAGCAGCAGATATGCCGCT 8 21 0 TATGAAGGGTAGCATAAAAAAGGAGAAATGAATG 10 101 1 CAAGCCTTTTATAGTAAAGTAGAAGAAGAAACACT 4 63 1 GTAAATATATACAGCAAAAAAGAAGAAATTTAACA 10 52 0 TGGGCAATGAAAGTTAAAAAGGCAGAAGACAGCCA 12 50 1 AGAGGAAATTAACTCAAAAAGGGGGTTGGTTGCTG 0 63 0 CAGGGTAATGACATAAGAAAAGGAGTGAACAT 3 7 0 AAAGTTTTAAAATAAAAAATGGAAGAAGTTCTTTT 12 85 0 ACAGACAGAAAACATAAAAGAGGTGGGCCA 6 64 1 ACACTTTGGCATACAAAAAAAGCTGCCTGTACAGA 4 14 0 AAATAAGAGGAATCAAAAACGGAGGGATGAATA 13 277 1 ATACATACTGACAATAAAGCAGAACCTCTTAAGAG 13 124 1 GTTTGGAGAAAAAATAAAGCAGAACCTCTTAAGAG 13 149 0 AAACCGAAAAACAGCGCTATCAAAGCG 11 2 1 TGTTTACCATATAAAAAAACAGCGCTTTGATAGCG 11 24 0 TGCATATCTTATAAAAAACAAGGGGGGCTAAAC 12 8 0 GTTGATACAGAGTATAAAGGAGCGTCAATC 7 280 1 TGAAACGAGAAAGCGGCATATCTGCTGCT 8 4 1 TTTCATACTGATTGCAGAGCAGATGTTTCACCAAT 13 227 1 ATTTACTATAATAACAGAAAAGGATAGGGGGAATA 1 80 1 TACATATGTAAACAAAGAAAGGGTGCTTCAA 3 129 1 * **** ***** MAP Score: 29.2806 Motif 2 GAAGTTGTTGATACAGAGTATAAAGGAGCGTCAATC 7 274 1 TGACGATATTAGATTTATCTTAAAGGAGGAGTCAACGA 9 83 1 CGCTGAGAGGAAATTAACTCAAAAAGGGGGTTGGTTGC 0 65 0 GTCTCCATACATACTGACAATAAAGCAGAACCTCTTAA 13 118 1 ATAGTGACAGACAGAAAACATAAAAGAGGTGGGCCA 6 58 1 ATGGGTAAATATATACAGCAAAAAAGAAGAAATTTAAC 10 53 0 AACAGAAATCATATATAATGAAAACGGATACAAATAAA 8 87 1 TCAATAAATAAGAGGAATCAAAAACGGAGGGATGAATA 13 272 1 CAGCTTTGAAACACAAAATACAGAGGGAAAAACCGCAA 7 55 1 TCACCGGGAAAAAAGTACGAAAAACGAAGTTGTTGATA 7 249 1 AATACATCCAATACGCAAATCAAACGAACTGTGTAAAT 3 71 0 GTTAAAAAGCAAAAATAAACAAAAACGATTCAAAAACA 8 49 1 GGTACACAACAAATAGACATGAAAACAAAGGAGGAGAA 0 174 1 CAGCTGTTTCATACTGATTGCAGAGCAGATGTTTCACC 13 221 1 TTAAAAAATAATCAATATTTTAAAGGGAATTAATTAAA 1 35 0 AGAAGAAGAAACACTTTATTGAAAGCGGCGACGTTGCT 4 83 1 TAAATTATTGAAAGAAGGTTCAAAAGGAA 11 157 1 TTTGCTTTTTAACAAAAAAAGAAAGCAGCAGATATGCC 8 24 0 CCTGTGGTTTGGAGAAAAAATAAAGCAGAACCTCTTAA 13 152 0 TATATTTACTATAATAACAGAAAAGGATAGGGGGAATA 1 77 1 AATTAATTAAAAATATTAATCAGAGGGAGAATAGAA 1 8 0 TACAAAATAGAAACACGGTTGAGAGGGGATTTTTATC 5 142 1 TTTTTTTATAAAAGGCTTGAAAAAACGAAACGTACTTG 5 53 1 TAAAAAGGCAGAAGACAGCCAAAAAGAACTTCTTCCAT 12 64 1 AGCTCTTTGCATATCTTATAAAAAACAAGGGGGGCTAA 12 12 0 CCTCCATTTTCAATGTAATTTAAAGGAAGATCCGCCGA 11 110 1 * * * ******* MAP Score: 21.4417 Motif 3 GAGGAAATTAACTCAAAAAGGGGGTTGGTTGCT 0 64 0 AAATAGACATGAAAACAAAGGAGGAGAATCATC 0 184 1 GGGTAATGACATAAGAAAAGGAGTGAACAT 3 7 0 ATTTCTTCTGATTAAAAAAACGGATACAGGGTA 3 35 0 ACATATGTAAACAAAGAAAGGGTGCTTCAA 3 130 1 ACTTTGGCATACAAAAAAAGCTGCCTGTACAGA 4 14 0 TTTTATACAAAATAGAAACACGGTTGAGAGGGG 5 137 1 ACAGACAGAAAACATAAAAGAGGTGGGCCA 6 64 1 GGAAAAAAGTACGAAAAACGAAGTTGTTGATAC 7 255 1 TGAAACGAGAAAGCGGCATATCTGCT 8 3 1 TTTTTAACAAAAAAAGAAAGCAGCAGATATGCC 8 24 0 GAAATCATATATAATGAAAACGGATACAAATAA 8 91 1 GAAAACGGATACAAATAAAAGGGTATGGAGGAA 8 106 1 AAATATATACAGCAAAAAAGAAGAAATTTAACA 10 52 0 TATGAAGGGTAGCATAAAAAAGGAGAAATGAAT 10 101 1 ATATCTTATAAAAAACAAGGGGGGCTAAAC 12 7 0 GGCAATGAAAGTTAAAAAGGCAGAAGACAGCCA 12 52 1 CATACATACTGACAATAAAGCAGAACCTCTTAA 13 123 1 GGTTTGGAGAAAAAATAAAGCAGAACCTCTTAA 13 152 0 AATAAGAGGAATCAAAAACGGAGGGATGAATA 13 278 1 * ** ******* MAP Score: 16.1729 Motif 4 ATGTGAAACATTTTTCTGATAAAGCAATGCGAA 0 107 1 TTAGGTGAAGTTTTTTTTATAAAAGGCTTGAAA 5 42 1 TGCTGCTTTCTTTTTTTGTTAAAAAGCAAAAAT 8 32 1 TTTTTTTTAGTTTTTTTATTAAACCTTTTATCC 9 45 1 CTTCTTCCATTTTTTATTTTAAAACTTTTTTAA 12 92 1 ATACAAAATGTATTTTTATTAAATATAATTTAT 5 104 1 TATTGCAAGCCTTTTATAGTAAAGTAGAAGAAG 4 58 1 GGAAATTAGTTACTTTTGTTAAATTTCTTCTTT 10 36 1 CTCTGATTAATATTTTTAATTAATTCCCTTTAA 1 21 1 TCCTTTTCTGTTATTATAGTAAATATAATATTT 1 71 0 ATATAATTTATTTTTATACAAAATAGAAACACG 5 126 1 GCGCTGTTTTTTTATATGGTAAACAATAATAAA 11 34 1 GACGATATTAGATTTATCTTAAAGGAGGAGTCA 9 84 1 TAAATATCATTTCTTCTGATTAAAAAAACGGAT 3 43 0 AAATACTATTTATTTATGGGAAATTAGTTACTT 10 18 1 AAGCTCTTTGCATATCTTATAAAAAACAAGGGG 12 18 0 ***** * **** MAP Score: 15.8175 Motif 5 GCTGAGAGGAAATTAACTCAAAAAGGGGGTTGGTTGCTG 0 63 0 TGCCAAGCCATGTTTATCCAAAGAGTGTGTGAGGTACAC 0 142 1 ATATCGTACATATGTAAACAAAGAAAGGGTGCTTCAA 3 123 1 TACTTGTTAAAGTGTATACATACAAAATGTATTTTTATT 5 85 1 ATAGTGACAGACAGAAAACATAAAAGAGGTGGGCCA 6 58 1 TCAAAAACAAACAGAAATCATATATAATGAAAACGGATA 8 78 1 ATATAATGAAAACGGATACAAATAAAAGGGTATGGAGGA 8 99 1 ATGGGTAAATATATACAGCAAAAAAGAAGAAATTTAACA 10 52 0 AGCCGATATGAAGGGTAGCATAAAAAAGGAGAAATGAAT 10 95 1 GTTTTTTTATATGGTAAACAATAATAAAGTCCTAGTTTA 11 39 1 TGTTTTTTATAAGATATGCAAAGAGCTTGGGCAATGAAA 12 23 1 CAAGAAGATGAGTGAAACCATAAATATGCAGGCTACGCT 13 29 1 TTCGACTCCCACCGTCTCCATACATACTGACAATAAAGC 13 105 1 TCTCCAAACCACAGGCACCAAAAAGTGCGTACTTCCATT 13 175 1 TCAATAAATAAGAGGAATCAAAAACGGAGGGATGAATA 13 272 1 * * ** **** * * MAP Score: 13.487 Motif 6 CGCTGAGAGGAAATTAACTCAAAAAGGGGGTTGG 0 69 0 TGTGAGGTACACAACAAATAGACATGAAAACAAA 0 169 1 AATAGACATGAAAACAAAGGAGGAGAATCATC 0 185 1 TATATTTACTATAATAACAGAAAAGGATAGGGGG 1 77 1 GATATCGTACATATGTAAACAAAGAAAGGGTGCT 3 122 1 CAAGCCTTTTATAGTAAAGTAGAAGAAGAAACAC 4 63 1 AAAATAAATTATATTTAATAAAAATACATTTTGT 5 106 0 TCACCGGGAAAAAAGTACGAAAAACGAAGTTGTT 7 249 1 TTTTAACAAAAAAAGAAAGCAGCAGATATGCCGC 8 22 0 GTTAAAAAGCAAAAATAAACAAAAACGATTCAAA 8 49 1 AAAACGATTCAAAAACAAACAGAAATCATATATA 8 70 1 AACAGAAATCATATATAATGAAAACGGATACAAA 8 87 1 GTTTAATAAAAAAACTAAAAAAAACACCCAAGCG 9 35 0 AAAAAAGAAGAAATTTAACAAAAGTAACTAATTT 10 38 0 GTAAATATATACAGCAAAAAAGAAGAAATTTAAC 10 53 0 GAAGGGTAGCATAAAAAAGGAGAAATGAATG 10 104 1 TGCATATCTTATAAAAAACAAGGGGGGCTAAAC 12 9 0 AAGGCAGAAGACAGCCAAAAAGAACTTCTTCCAT 12 68 1 AAGTTTTAAAATAAAAAATGGAAGAAGTTCTTTT 12 85 0 ATACATACTGACAATAAAGCAGAACCTCTTAAGA 13 124 1 GTTTGGAGAAAAAATAAAGCAGAACCTCTTAAGA 13 150 0 ATTTCTGTCAATAAATAAGAGGAATCAAAAACGG 13 265 1 * ** *** **** MAP Score: 12.3515 Motif 7 GCAACCAACCCCCTTTTTGAGTTAATTTCCTCTCAGCGT 0 65 1 CTCTCAGCGTTCCATGTGAAACATTTTTCTGATAAAGCA 0 94 1 AAGGTGCCAAGCCATGTTTATCCAAAGAGTGTGTGAGGT 0 138 1 TTTAATTAATTCCCTTTAAAATATTGATTATTTTTTAAA 1 35 1 ATTCCCCCTATCCTTTTCTGTTATTATAGTAAATATAAT 1 75 0 GATATTGCAAGCCTTTTATAGTAAAGTAGAAGAAGAAAC 4 56 1 GATAAAAATCCCCTCTCAACCGTGTTTCTATTTTGTAT 5 141 0 TTGCGGTTTTTCCCTCTGTATTTTGTGTTTCAAAGCTGG 7 54 0 TTGTCATGTCGGCTTTTCAAGTCAACTTGCGTATTGATA 7 164 0 TTTATTTGTATCCGTTTTCATTATATATGATTTCTGTTT 8 86 0 TATATATTTACCCATTTCCAGCCGATATGAAGGGTAGCA 10 76 1 CATTTTTTCCTCCATTTTCAATGTAATTTAAAGGAAGAT 11 102 1 TTCCTTTTGAACCTTCTTTCAATAATTTAC 11 156 0 GCTGTCTTCTGCCTTTTTAACTTTCATTGCCCAAGCTCT 12 44 0 AGTGCGTACTTCCATTTCAATCCCAGCTGTTTCATACTG 13 198 1 TATTCATCCCTCCGTTTTTGATTCCTCTTATTTATTGAC 13 271 0 *** *** * * ** MAP Score: 10.2871 Motif 8 ATGATTCTCCTCCTTTGTTTTCATGTCTATTT 0 184 0 CCCCCTATCCTTTTCTGTTATTATAGTAAATA 1 79 0 TCATTACCCTGTATCCGTTTTTTTAATCAGAA 3 31 1 TTGAAGCACCCTTTCTTTGTTTACATATGTAC 3 128 0 TAACAAGTACGTTTCGTTTTTTCAAGCCTTTT 5 62 0 CCTCTCAACCGTGTTTCTATTTTGTATAAAAA 5 136 0 TGCGGTTTTTCCCTCTGTATTTTGTGTTTCAA 7 60 0 ACTTCGTTTTTCGTACTTTTTTCCCGGTGAAT 7 247 0 CATATCTGCTGCTTTCTTTTTTTGTTAAAAAG 8 26 1 TTTTTGTTTATTTTTGCTTTTTAACAAAAAAA 8 42 0 TGTTTTTGAATCGTTTTTGTTTATTTTTGCTT 8 55 0 TATATGATTTCTGTTTGTTTTTGAATCGTTTT 8 70 0 CCTTTTATTTGTATCCGTTTTCATTATATATG 8 96 0 TTGGGTGTTTTTTTTAGTTTTTTTATTAAACC 9 38 1 TTTTGTTAAATTTCTTCTTTTTTGCTGTATAT 10 49 1 CATTCATTTCTCCTTTTTTATGCTACCCT 10 106 0 TTTAGAACTATTTTTCATTTTTTCCTCCATTT 11 87 1 TTTCATTTTTTCCTCCATTTTCAATGTAATTT 11 99 1 GTTTAGCCCCCCTTGTTTTTTATAAGAT 12 6 1 TTTGGCTGTCTTCTGCCTTTTTAACTTTCATT 12 55 0 AAAAAGAACTTCTTCCATTTTTTATTTTAAAA 12 84 1 TACGAGCGTAGCCTGCATATTTATGGTTTCAC 13 40 0 AAGAGGTTCTGCTTTATTTTTTCTCCAAACCA 13 154 1 CCGTTTTTGATTCCTCTTATTTATTGACAGAA 13 267 0 TATTCATCCCTCCGTTTTTGATTCCTCTT 13 281 0 ** *** ***** MAP Score: 2.47964