AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions019_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944241243 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ycgT 161 similar to thioredoxin reductase #1 ydbP 174 similar to thioredoxin #2 trxA 300 thioredoxin #3 yumC 300 similar to thioredoxin reductase #4 trxB 205 thioredoxin reductase #5 yvcE 300 alternate gene name: yzkA; similar to cell wall-binding protein #6 ahpC 300 alkyl hydroperoxide reductase (small subunit) Motif 1 TCAGCATGCCCAAAAATAATTAGATCATTTT 1 83 0 ACAATTGCCCCAATAATCATTAAAATGGTAC 2 101 0 TGTGATCAGGAAAAAATAATTTGTAAGCATT 2 212 1 GCTATACTAAAAATCATCATTTCACATTGGA 2 268 1 ACCCATAATAAAATCATCATTTGTGTTAGCT 3 12 1 AAGGACTTCACAAAAAACTTTTCAATATATT 3 68 0 CCGGCTGGCCCAAGAAACATTCAGAAAAAGA 3 125 1 AACATTCAGAAAAAGATCATTTCATTTGGTT 3 140 1 TTCACTCCTTAAACCATCTTTTCAAGTTTGG 4 180 0 GATGTCAAGTCACACATCATTTGTCATTTTT 5 25 0 TCCTTATGTACGAGAATCATTATACCATCAA 5 103 0 TAACCATAAACAACCATCATTCCTCGTAGAG 5 202 1 TAATCGCTTTCAATAATAATTCTAATTATAT 6 244 0 *** ******* MAP Score: 15.4979 Motif 2 GACCACAAGGTAGAAGAAATGAATAAACAAA 0 57 1 TTTTCCGGTGAAAATGATAAGATAGTAAAGA 1 56 0 AATGGCATTGAAAAGGAGATGTGACAT 1 157 1 CAGGGCATGGTAAAGTACATGACAGTGAAGA 2 49 1 CATGACAGTGAAGAGGAGATGTGATCTTATG 2 66 1 TATATGGTTGAATGGGATATGCTCTTTTTTT 2 164 0 AGCGTGAACGAATGGGAGATGCTATACTAAA 2 248 1 GAATTCCTCCAATGTGAAATGATGATTTTTA 2 275 0 TAAATATGACAAGGGCCTTCTAT 4 2 1 TGTATTCGAAAAGGGTATATGTTAATAAAGA 4 48 0 CATGAGATTTTATAGGATATGGGTAAGGAAT 4 113 1 GGCTCTTTCTTATAAGATAAGAATCCCCATC 4 150 0 ATACAACCAGAATAAGAGATGCACAGAATAA 5 170 1 TCATTTATTATAAAAGAAATGCCTAAATCCT 6 137 1 ******* *** MAP Score: 14.0433 Motif 3 CATATTTCAAGGGCCTTTGTTTATTCATTT 0 73 0 CTGATGTTGAATGCATTTGTATGTAATTCC 1 110 1 CTCCTTTTCAATGCCATTTTAATATAAAAT 1 145 0 CATGCCGGCGCTCTTTTTCAGGTTTTA 2 7 1 CTTATGCTTCGTACCATTTTAATGATTATT 2 91 1 ATGATTATTGGGGCAATTGTAGTGATCGGG 2 112 1 GTAGTGATCGGGGCCATTATCAGATTTGTG 2 130 1 TGAATGGGATATGCTCTTTTTTTAAAACAC 2 157 0 CCATTCGTTCACGCTATTTTAATGCTTACA 2 233 0 TTCATTTAGGAGGCAATTTTCGT 3 287 1 TGTTTATAGAAGGCCCTTGTCATATTTA 4 8 0 TATAAACAGAAGGCTCTTTCTTTATTAACA 4 30 1 TTATTAACATATACCCTTTTCGAATACATT 4 51 1 TCATGGTGATACGCTATTTTTTTGCTCAAC 4 88 0 TTTCAAGTTTGGGCTCTTTCTTATAAGATA 4 162 0 ATTCTGCTTTTGGCCATTGTCCTTTGCCCT 6 11 1 TCAGAATGCCAGGCCGTTTTGGCATTTGAA 6 62 0 AGGTTTTCAGGGACTTTTGTAAATCAGAAT 6 85 0 ********** MAP Score: 11.3197 Motif 4 ACAATTCATCTTTACTATCTTATCATTTTCACCGGAAA 1 48 1 TGTGTTTTAAAAAAAGAGCATATCCCATTCAACCATAT 2 156 1 TGCTATACTAAAAATCATCATTTCACATTGGAGGAATT 2 267 1 AGACCCATAATAAAATCATCATTTGTGTTAGCTT 3 6 1 TAAGGACTTCACAAAAAACTTTTCAATATATTTCATAA 3 62 0 AAACATTCAGAAAAAGATCATTTCATTTGGTTATTATC 3 139 1 TTCTGTTTATAGAAGGCCCTTGTCATATTTA 4 3 0 TGTTGAGCAAAAAAATAGCGTATCACCATGAGATTTTA 4 87 1 ATTCACTCCTTAAACCATCTTTTCAAGTTTGGGCTCTT 4 174 0 CAAACAGATGTCAAGTCACACATCATTTGTCATTTTTC 5 24 0 TATCTAATTGAGAATCAGCCTCTCATTTATTATAAAAG 6 115 1 * ** * * * *** * MAP Score: 10.8372 Motif 5 AACTTTGATATAGATGTGAACGGGAGGCAGGACGG 0 136 1 TTAGATCATTTTCCGGTGAAAATGATAAGATAGTA 1 60 0 TATATTAAAATGGCATTGAAAAGGAGATGTGACAT 1 149 1 GTAAAGTACATGACAGTGAAGAGGAGATGTGATCT 2 58 1 ATTGGGGCAATTGTAGTGATCGGGGCCATTATCAG 2 118 1 CTCATTTTTATATGGTTGAATGGGATATGCTCTTT 2 168 0 ATGAGTAAACCGGCTGTGATCAGGAAAAAATAATT 2 198 1 TGCTGACTCGTCAATTTGAACGGCAATATGGTATA 3 239 1 GGGTAAGGAATACGTTTGATGGGGATTCTTATCTT 4 133 1 GAGGACAGGTTCACAGTAAAAGGGAGGATATAAAA 5 274 1 TAATTAGAATTATTATTGAAAGCGATTATGCTTTC 6 247 1 * ***** **** MAP Score: 10.7805 Motif 6 TTTTTATTTTATATTAAAATGGCATTGAAAAG 1 140 1 ATGGCATTGAAAAGGAGATGTGACAT 1 158 1 ATGACAGTGAAGAGGAGATGTGATCTTATGCT 2 67 1 TAAAACACAAATCTGATAATGGCCCCGATCAC 2 133 0 AGCCGGATAAACATGATAATAGTGCTACGGGT 3 99 0 ATTGCCTCCTAAATGAAAATTGTTATTAATTA 3 272 0 TAAATATGACAAGGGCCTTCTATAA 4 3 1 ATGAGATTTTATAGGATATGGGTAAGGAATAC 4 114 1 CGCTTAAGAAAAATGACAAATGATGTGTGACT 5 17 1 GGACAGGTTCACAGTAAAAGGGAGGATATAAA 5 276 1 GGTCAAGGGCAAAGGACAATGGCCAAAAGCAG 6 14 0 * **** ***** MAP Score: 9.35346 Motif 7 ATTGATATTCATTCTCAATTAAAACTTTGA 0 114 1 TCTTTACTATCTTATCATTTTCACCGGAAA 1 56 1 ATTTTTGGGCATGCTGATGTTGAATGCATT 1 97 1 TGAATGGGATATGCTCTTTTTTTAAAACAC 2 157 0 CCAATGTGAAATGATGATTTTTAGTATAGC 2 268 0 GCTAACACAAATGATGATTTTATTATGGGT 3 12 0 CCGTAGCACTATTATCATGTTTATCCGGCT 3 101 1 ACCAAATGAAATGATCTTTTTCTGAATGTT 3 140 0 ATTAATAACAATTTTCATTTAGGAGGCAAT 3 274 1 TATTCTGCTTTTGGCCATTGT 6 1 1 GCTTTTGGCCATTGTCCTTTGCCCTTGACC 6 16 1 ACGGCCTGGCATTCTGATTTACAAAAGTCC 6 75 1 TGAGAGGCTGATTCTCAATTAGATAAGGTT 6 110 0 ATTGAAAGCGATTATGCTTTCTAATACATT 6 261 1 ********** MAP Score: 8.53903 Motif 8 TCTATATCAAAGTTTTAATTGAGAATGAATATCAATACAAA 0 109 0 GGTGAAAATGATAAGATAGTAAAGATGAATTGTAGTGGGGG 1 40 0 ATGCCATTTTAATATAAAATAAAAAGGAATTACATACAAAT 1 124 0 TTTTATATTAAAATGGCATTGAAAAGGAGATGTGACAT 1 146 1 ATGGTAAAGTACATGACAGTGAAGAGGAGATGTGATCTTAT 2 55 1 AAAATGAGTAAACCGGCTGTGATCAGGAAAAAATAATTTGT 2 195 1 ATCAGGAAAAAATAATTTGTAAGCATTAAAATAGCGTGAAC 2 216 1 TGCCGTTCAAATTGACGAGTCAGCAGAAAAAATCGTAAGGA 3 223 0 AATTAATAACAATTTTCATTTAGGAGGCAATTTTCGT 3 273 1 TGAGCAAAAAAATAGCGTATCACCATGAGATTTTATAGGAT 4 90 1 TTTGATGGGGATTCTTATCTTATAAGAAAGAGCCCAAACTT 4 147 1 CCTACCTGTCACACCTTTATTAAGATGAAAAAAAGTAGGTT 6 165 1 TTTCAATAATAATTCTAATTATATATGAATTATTAATTAAT 6 227 0 TATGCTTTCTAATACATTTTTAGGAGGAATATACATT 6 273 1 * * * * ***** * MAP Score: 5.68096 Motif 9 CCCTTGAAATATGATATACTTTGTATTGATATTCATTCTCAAT 0 90 1 TTTGGGCATGCTGATGTTGAATGCATTTGTATGTAATTCCTTT 1 100 1 GTATGTAATTCCTTTTTATTTTATATTAAAATGGCATTGAAAA 1 128 1 TACAATTGCCCCAATAATCATTAAAATGGTACGAAGCATAAGA 2 90 0 TATTGGCGGGATTTTATGAAATATATTGAAAAGTTTTTTGTGA 3 49 1 ACGATTTTTTCTGCTGACTCGTCAATTTGAACGGCAATATGGT 3 228 1 TTAACATATACCCTTTTCGAATACATTTAATCGTGTTGAGCAA 4 54 1 GTATTCCTTACCCATATCCTATAAAATCTCATGGTGATACGCT 4 103 0 TTTTCAGGGACTTTTGTAAATCAGAATGCCAGGCCGTTTTGGC 6 69 0 CTAAATCCTACCTGTCACACCTTTATTAAGATGAAAAAAAGTA 6 159 1 AATAATAATTCTAATTATATATGAATTATTAATTAATATATAT 6 221 0 GAAAGCGATTATGCTTTCTAATACATTTTTAGGAGGAATATAC 6 264 1 ** * * * *** * * MAP Score: 4.61619 Motif 10 CACCCAATTGGTTTTTGCCTATTATAGAGTTTTCAG 0 16 1 CTACAATTCATCTTTACTATCTTATCATTTTCACCG 1 46 1 TGCCCAAAAATAATTAGATCATTTTCCGGTGAAAAT 1 72 0 TGTATGTAATTCCTTTTTATTTTATATTAAAATGGC 1 127 1 ATGCCGGCGCTCTTTTTCAGGTTTTAAAACAGCTCC 2 11 1 AAAGATCATTTCATTTGGTTATTATCGTAGCGGCCT 3 151 1 GCACGTTAGATCCTTACGATTTTTTCTGCTGACTCG 3 213 1 AAGTCACACATCATTTGTCATTTTTCTTAAGCGTGT 5 14 0 CGTACATAAGGAATTAGTGTTTTTTACATATGATGT 5 122 1 TATTCTGCTTTTGGCCATTGTCCTTTGCCCTT 6 6 1 GGCCGTTTTGGCATTTGAACATTTTATGACACCATG 6 45 0 ** **** ** ** MAP Score: 3.87502 Motif 11 GAATAAACAAAGGCCCTTGAAATATGATATACT 0 77 1 CTCCTTTTCAATGCCATTTTAATATAAAATAAA 1 142 0 CATGCCGGCGCTCTTTTTCAGGTTTTAAAA 2 7 1 TGCCCTGCCGGAGCTGTTTTAAAACCTGAAAAA 2 23 0 TGAATGGGATATGCTCTTTTTTTAAAACACAAA 2 154 0 CCATTCGTTCACGCTATTTTAATGCTTACAAAT 2 230 0 TGTTTATAGAAGGCCCTTGTCATATTTA 4 5 0 TATAAACAGAAGGCTCTTTCTTTATTAACATAT 4 30 1 TCATGGTGATACGCTATTTTTTTGCTCAACACG 4 85 0 TTTCAAGTTTGGGCTCTTTCTTATAAGATAAGA 4 159 0 * ******** * MAP Score: 3.76339 Motif 12 CAAGGTAGAAGAAATGAATAAACAAAGGCCCT 0 62 1 TTTTCCGGTGAAAATGATAAGATAGTAAAGAT 1 55 0 TTTTCACCGGAAAATGATCTAATTATTTTTGG 1 73 1 CAACCATATAAAAATGAGTAAACCGGCTGTGA 2 185 1 CAAACTTGAAAAGATGGTTTAAGGAGTGAATA 4 181 1 ACGCTTAAGAAAAATGACAAATGATGTGTGAC 5 16 1 ACCAGAATAAGAGATGCACAGAATAATTAACC 5 175 1 AGGGCAAAGGACAATGGCCAAAAGCAGAATA 6 9 0 ATGGTGTCATAAAATGTTCAAATGCCAAAACG 6 46 1 TATTATAAAAGAAATGCCTAAATCCTACCTGT 6 142 1 CACCTTTATTAAGATGAAAAAAAGTAGGTTAT 6 176 1 ATTCCTCCTAAAAATGTATTAGAAAGCATAAT 6 271 0 ****** **** MAP Score: 3.75996 Motif 13 CAAGGGCCTTTGTTTATTCATTTCTTCTACCTTG 0 62 0 TACAAATTATTTTTTCCTGATCACAGCCGGTTTA 2 203 0 CGTTCACGCTATTTTAATGCTTACAAATTATTTT 2 224 0 TATTGAAAAGTTTTTTGTGAAGTCCTTACCCGTA 3 72 1 ATCCTTACGATTTTTTCTGCTGACTCGTCAATTT 3 222 1 ATACGCTATTTTTTTGCTCAACACGATTAAATGT 4 76 0 TTTTTATATCCTCCCTTTTACTGTG 5 285 0 TTAATATATATTTTTTGTCAAGCCATAACCTACT 6 198 0 ATAATTAGAATTATTATTGAAAGCGATTATGCTT 6 246 1 ***** **** * MAP Score: 1.58901