AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions021_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241291
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yclI	212	similar to transporter
#1	ykfA	300	similar to immunity to bacteriotoxins
#2	ylmA	147	similar to ABC transporter (ATP-binding protein)
#3	yqgH	68	alternate gene name: yzmC; similar to phosphate ABC transporter (permease)
#4	yqgG	153	alternate gene name: yzmB; similar to phosphate ABC transporter (binding protein)
#5	yurJ	181	similar to multiple sugar ABC transporter (ATP-binding protein)
#6	yvrC	300	similar to iron-binding protein

Motif 1
GGTTGTTTTGATGCTTTTTTATATAATAGC	0	20	1
GCGCGGTGTCAAGCTTTTTTGGATCCGGCG	1	139	0
CCTGAAGACCGAGCTCTTCTAAAAATAAAA	1	169	0
ATCGTTTTAAAGGCTTTTCA          	2	0	0
GTTGTTTTAAAGGCTTTTCTATTGATTATG	2	30	1
GTGCGGGGACAACCGTTTCTCCTCTTAACA	3	27	1
CACATCATGTGAGCGTTTTTT         	4	1	0
CACATGATGTGGGCGTTTTTTTTATACAAA	4	20	1
TTGTAAATCAGTGCGTTTTTTTGTATAAAA	4	39	0
AAAGATAGGGGGACTTTTCTG         	5	170	1
TGACATTCGTATCCGTTTTTCGGAGTAATT	6	50	0
TGTAAACAATAGGCTTTTTTGTGTTGTTTA	6	225	1
CGTCGTAGAGATGCTTTTTTAGTTCGTTTA	6	267	1
          **********
MAP Score: 17.9547

Motif 2
  TATATCCTCCGGTTGTTTTGATGCTTTTTTA	0	8	1
TTGTTTTGATGCTTTTTTATATAATAGCACCAT	0	22	1
AAACGCAAAACCTTCTGTTTAAAATGGTGCTAT	0	45	0
ATAGATTGTTCATATTTTTTTCATACCTTTGGA	0	111	1
TTGACACCGCGCTTTTATTTTTAGAAGAGCTCG	1	157	1
CCTTTAAAACGATGTTGTTTTAAAGGCTTTTCT	2	17	1
TGTTTTAAAGGCTTTTCTATTGATTATGGATGG	2	32	1
TCCCCGCACTCCTCTTTTTATTAAGA       	3	3	0
ATGATGTGGGCGTTTTTTTTATACAAAAAAACG	4	23	1
CTCCTTTTAACCTATTATTTATATTATAATGTA	5	18	1
ACTTGGTCTTTCTGTTATTTTTAGAGTAATCGA	5	110	0
CACAAAAAAGCCTATTGTTTACACATCATCTGT	6	215	0
TAGGCTTTTTTGTGTTGTTTACAGCATCTTTAC	6	234	1
          *** ** **** *
MAP Score: 11.7581

Motif 3
GCATCAAAACAACCGGAGGATATA      	0	4	0
ATAATAGGTTAAAAGGAGGCTACCCT    	5	6	0
AAAAATACCTATACGGAGGAACATAA    	0	196	1
ATTACACATTATACGCAGGGGGAATTCAGG	4	131	1
GCTTTTTTGGATCCGGCGGACTTGCGGGCG	1	127	0
TCTTGCACGTATACGTAGGGTGCAGAGCAA	1	27	1
GTCCGTGAACAACAGCCGGCTTAAAAGGGA	6	91	1
GTGCTGATCAAACAGGCAGGTATCCTGGCT	6	172	0
   TCTTAATAAAAAGAGGAGTGCGGGGAC	3	7	1
CTATTAATTTATCAGCAAGGGGACGCGCCC	0	147	1
ATAAAAGGCAATAAAGAGGAGGACCACG  	2	129	1
GCACCATTTTAAACAGAAGGTTTTGCGTTT	0	48	1
ACGTTTTGGAAAAAGTAAGGTATCCTAGTT	2	68	1
GGAAACCGGTAAAAGCCGGTGCGGTCCCGC	6	118	1
ATGATGTGTAAACAATAGGCTTTTTTGTGT	6	219	1
CAAGGCGCTGAAAAACCAGCACGGCTATTT	1	209	1
          **********
MAP Score: 7.80204

Motif 4
CTATTAATTTATCAGCAAGGGGACGCGCCCCAGAGGCG	0	147	1
TTCTAAAAATAAAAGCGCGGTGTCAAGCTTTTTTGGAT	1	145	0
TTATTTTTAGAAGAGCTCGGTCTTCAGGTGAAGTTGGG	1	171	1
GCGCTGAAAAACCAGCACGGCTATTTAGCGGGACAGGA	1	213	1
ACGTTTTGGAAAAAGTAAGGTATCCTAGTTCGTACAAA	2	68	1
TAATAAAAAGAGGAGTGCGGGGACAACCGTTTCTCCTC	3	13	1
GCCAAGCGCCAAGAGCCAGGATACCTGCCTGTTTGATC	6	159	1
TGCCTGTTTGATCAGCACGAATTCTGCGAGGACAGATG	6	184	1
          *  *** ***  **   *
MAP Score: 7.36123

Motif 5
TATATCCTCCGGTTGTTTTGATGCTTTTTTAT	0	10	1
TTGTTTTGATGCTTTTTTATATAATAGCACCA	0	22	1
TTTCACAATTGTTAGTTTTTATTTCATCAACT	0	75	1
ACTAGAAATAGATTGTTCATATTTTTTTCATA	0	104	1
        GCGGTATTTTTCCTCTTTCTTGCA	1	2	1
CAAATGAAAGGAGTGTTTTCGTTGAATTACAA	1	54	1
GCGGTGTCAAGCTTTTTTGGATCCGGCGGACT	1	135	0
TTGACACCGCGCTTTTATTTTTAGAAGAGCTC	1	157	1
ATTGATTATGGATGGTTTACGTTTTGGAAAAA	2	50	1
CACATGATGTGGGCGTTTTTTTTATACAAAAA	4	20	1
AAATCAGTGCGTTTTTTTGTATAAAAAAAACG	4	33	0
GAAACAACTTGGTCTTTCTGTTATTTTTAGAG	5	117	0
TGACTGACAGGCTTGTATATGTGTCCTGAATG	6	10	0
TAAACAATAGGCTTTTTTGTGTTGTTTACAGC	6	227	1
TCGTAGAGATGCTTTTTTAGTTCGTTTAGGAG	6	269	1
          *** ****** *
MAP Score: 3.32983

Motif 6
CCCTACGTATACGTGCAAGAAAGAGGAAAAATACCGC  	1	8	0
TTGCACGTATACGTAGGGTGCAGAGCAAATGAAAGGAGT	1	29	1
CTCTTCTAAAAATAAAAGCGCGGTGTCAAGCTTTTTTGG	1	147	0
TCTTCAGGTGAAGTTGGGCAAGGCGCTGAAAAACCAGCA	1	191	1
GGCGATCTCCATGAGATGTTCAGAGACGATGAGGTAAAA	1	263	1
TCTTAATAAAAAGAGGAGTGCGGGGACAACCGTTTCTCC	3	10	1
ACTCCTATGAATGTGTTAAGAGGAGAAACGGTTGTCCCC	3	31	0
GACAAATTACACATTATACGCAGGGGGAATTCAGGAA  	4	126	1
TTATATTATAATGTATTATGACGTTATAATACAAATTTA	5	36	1
AATGTCAAATAGGTGCCGGTCCGTGAACAACAGCCGGCT	6	73	1
CTGTCCTCGCAGAATTCGTGCTGATCAAACAGGCAGGTA	6	180	0
GAATTCTGCGAGGACAGATGATGTGTAAACAATAGGCTT	6	202	1
          * **   * ** * *  **
MAP Score: 1.62895