AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions021_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944241307 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yclI 212 similar to transporter #1 ykfA 300 similar to immunity to bacteriotoxins #2 bpr 300 bacillopeptidase F #3 spoIIGA 194 protease #4 sigE 62 RNA polymerase sporulation-specific sigma-29 factor (sigma-E) #5 sigG 139 RNA polymerase sporulation-specific sigma factor (sigma-G) #6 ylmA 147 similar to ABC transporter (ATP-binding protein) #7 yqgH 68 alternate gene name: yzmC; similar to phosphate ABC transporter (permease) #8 yqgG 153 alternate gene name: yzmB; similar to phosphate ABC transporter (binding protein) #9 pbpA 113 penicillin-binding protein 2A #10 yqgE 33 similar to hypothetical proteins #11 sodA 178 superoxide dismutase #12 yqgC 109 yqgC #13 yurJ 181 similar to multiple sugar ABC transporter (ATP-binding protein) #14 yvrC 300 similar to iron-binding protein Motif 1 GGTTGTTTTGATGCTTTTTTATATAATAGC 0 20 1 GCGCGGTGTCAAGCTTTTTTGGATCCGGCG 1 139 0 CTTTTTCAACATGCTTTTTAAAAAAAGTGT 2 270 0 CCAATGACGGCAGCTTTTTTTCCAC 3 5 0 CCGTCATTGGCAGCTTTTTTTATATCCTCT 3 25 1 ATCGTTTTAAAGGCTTTTCA 6 0 0 GTTGTTTTAAAGGCTTTTCTATTGATTATG 6 30 1 GTGCGGGGACAACCGTTTCTCCTCTTAACA 7 27 1 CACATCATGTGAGCGTTTTTT 8 1 0 CACATGATGTGGGCGTTTTTTTTATACAAA 8 20 1 TTGTAAATCAGTGCGTTTTTTTGTATAAAA 8 39 0 ATTCGGTTCAAACCCTTTTTACATAGAACC 8 78 1 AACATCACCTTTTCTATTTACAGAA 9 98 0 GCCAAATCGTGAGCTTTTTCATTGATTACA 11 76 1 GCTTCACAGCGAGCCTTTCTTCATTCAATG 11 122 0 TGACATTCGTATCCGTTTTTCGGAGTAATT 14 50 0 TGTAAACAATAGGCTTTTTTGTGTTGTTTA 14 225 1 CGTCGTAGAGATGCTTTTTTAGTTCGTTTA 14 267 1 ********** MAP Score: 18.3176 Motif 2 CTATTAATTTATCAGCAAGGGGACGCGCCCCA 0 147 1 ACGTATACGTGCAAGAAAGAGGAAAAATACCG 1 11 0 AAAAGACTTTATAAGAAGGAAGTGTGAAGAGA 2 51 0 CTAAGCGAAGGAAAGCAATAGGGAAAAAGACT 2 75 0 AAATGTCACAAAAATAAATGGGTCTAATTATC 2 117 0 ACCATTCATTATTAAAAGGAGGGACGACACTT 2 244 1 AAAAGCATGTTGAAAAAGGGGGATGAAA 2 282 1 TTTATACTTATGAAGCAAGAAGGGGAACAGCG 3 146 1 CGTGAGGCAAGAAAGAAAGGAGTCAGAT 3 176 1 CGGCGTGACATTTAGAAGGGAGAGGAAG 4 44 1 AAATCCCTGTAAAATCAAGGGGTTCTAACCAT 5 18 0 TTTACGTTTTGGAAAAAGTAAGGTATCCTAGT 6 65 1 ATTATAAAAGGCAATAAAGAGGAGGACCACG 6 126 1 TCTTAATAAAAAGAGGAGTGCGGGGA 7 4 1 ATTACACATTATACGCAGGGGGAATTCAGGAA 8 131 1 TTTTTTTGCCAAAAAGGGGTTATCTGTAG 9 7 1 AGACTAAGGGATAGTAAAGGGGAGTCAGTA 10 13 1 CAGTACATATATACTAAGGAGGAATTATC 11 159 1 CATGCGTGTGAATACAAGGAAGACATGAAGAA 12 59 1 AGAAGACAGAGTAAAATGGGAGGATGGAAGCT 12 87 1 TAAATAATAGGTTAAAAGGAGGCTACCCT 13 7 0 TTAGAAATATAGCAAAAATGGGAATCGATTAC 13 86 1 ATAACGGGTCAAAAGATAGGGGGACTTTTCTG 13 159 1 CAGATGATGTGTAAACAATAGGCTTTTTTGTG 14 216 1 * ** ******* MAP Score: 18.025 Motif 3 GCAGAGCAAATGAAAGGAGTGTTTTCGTTG 1 48 1 CATTCATTATTAAAAGGAGGGACGACACTT 2 246 1 AAGCATGTTGAAAAAGGGGGATGAAA 2 284 1 GAGGCAAGAAAGAAAGGAGTCAGAT 3 179 1 CGTGACATTTAGAAGGGAGAGGAAG 4 47 1 AAAAGGCAATAAAGAGGAGGACCACG 6 131 1 TCTTAATAAAAAGAGGAGTGCGGGGACAA 7 9 1 ATGAATGTGTTAAGAGGAGAAACGGTTGTC 7 34 0 TTTTTTTGCCAAAAAGGGGTTATCTGTAGA 9 10 1 AAGGGATAGTAAAGGGGAGTCAGTA 10 18 1 AGACAGAGTAAAATGGGAGGATGGAAGCT 12 90 1 AATAATAGGTTAAAAGGAGGCTACCCT 13 7 0 ACGGGTCAAAAGATAGGGGGACTTTTCTG 13 162 1 ********** MAP Score: 16.3145 Motif 4 GTTTTGATGCTTTTTTATATAATAGCACCAT 0 24 1 ATTGTTCATATTTTTTTCATACCTTTGGACT 0 115 1 CTTATAAAGTCTTTTTCCCTATTGCTTTCCT 2 68 1 GACCCATTTATTTTTGTGACATTTTTATCAT 2 125 1 AGGGACGACACTTTTTTTAAAAAGCATGTTG 2 263 1 TTTCATCCCCCTTTTTCAACATGCTTTTTAA 2 279 0 ATGACGGCAGCTTTTTTTCCAC 3 1 0 TCATTGGCAGCTTTTTTTATATCCTCTCATT 3 28 1 GGATACCTTACTTTTTCCAAAACGTAAACCA 6 62 0 GATGTGGGCGTTTTTTTTATACAAAAAAACG 8 25 1 GGTTCAAACCCTTTTTACATAGAACCTTTAC 8 82 1 TTTTTTTGCCAAAAAGGGGTT 9 0 1 TTTTTTCGACTTTTTTCTACAGATAACCCCT 9 24 0 ACAAAGCATTCTTTTGTTACATTGAATGAAG 11 103 1 TCGATTCCCATTTTTGCTATATTTCTAAAAT 13 83 0 ******* *** MAP Score: 13.045 Motif 5 TATCCTCCGGTTGTTTTGATGCTTTTTTATATAATA 0 12 1 ATTGTTCATATTTTTTTCATACCTTTGGACTACTAT 0 115 1 GCGGTATTTTTCCTCTTTCTTGCACGTATA 1 4 1 TTCGATTTTGTCTTTTTTGTTTTTCTCTTCACACTT 2 28 1 TAGACCCATTTATTTTTGTGACATTTTTATCATTTT 2 123 1 CATTGGCAGCTTTTTTTATATCCTCTCATTATACTT 3 29 1 AAAACAACATCGTTTTAAAGGCTTTTCA 6 2 0 AAAACGATGTTGTTTTAAAGGCTTTTCTATTGATTA 6 22 1 CTCTTTATTGCCTTTTATAATTGTTTTAATTTTCAT 6 111 0 TGCCAGTTTTCATTTTAAAGGTTTTTTCGACTTTTT 9 40 0 TTCCATCCTCCCATTTTACTCTGTCTTCTTCATGTC 12 80 0 AATCGATTCCCATTTTTGCTATATTTCTAAAATAAA 13 80 0 AACAACTTGGTCTTTCTGTTATTTTTAGAGTAATCG 13 111 0 AAACAATAGGCTTTTTTGTGTTGTTTACAGCATCTT 14 228 1 CGTAGAGATGCTTTTTTAGTTCGTTTAGGAGGAAAA 14 270 1 * ***** * *** MAP Score: 11.6279 Motif 6 TATATCCTCCGGTTGTTTTGATGCTTTTT 0 8 1 CGGTTGTTTTGATGCTTTTTTATATAATAGC 0 19 1 GCGGTATTTTTCCTCTTTCTT 1 0 1 GCTTGACACCGCGCTTTTATTTTTAGAAGAG 1 155 1 CTAAATAGCCGTGCTGGTTTTTCAGCGCCTT 1 210 0 CCAATGACGGCAGCTTTTTTTCCAC 3 4 0 CCGTCATTGGCAGCTTTTTTTATATCCTCTC 3 25 1 CTTTCCCACAGAGCTTGCTTTATACTTATGA 3 128 1 CCTTTAAAACGATGTTGTTTTAAAGGCTTTT 6 17 1 CACATCATGTGAGCGTTTTTT 8 0 0 CACATGATGTGGGCGTTTTTTTTATACAAAA 8 20 1 TTGTAAATCAGTGCGTTTTTTTGTATAAAAA 8 38 0 TCAAGTAAGAGTGCCAGTTTTCATTTTAAAG 9 56 0 GCTTCACAGCGAGCCTTTCTTCATTCAATGT 11 121 0 CCTTTTAAGCCGGCTGTTGTTCACGGACCGG 14 88 0 GCCAGGATACCTGCCTGTTTGATCAGCACGA 14 173 1 CCGTCGTAGAGATGCTTTTTTAGTTCGTTTA 14 266 1 * ********* MAP Score: 7.05042 Motif 7 CACCATTTTAAACAGAAGGTTTTGCGTTTC 0 49 1 ACTTTTTTTAAAAAGCATGTTGAAAAAGGG 2 272 1 CGAAATCAGGAAATCCCTGTAAAATCAAGG 5 30 0 TGAAAAGCCTTTAAAACGATGT 6 2 1 TAATCAATAGAAAAGCCTTTAAAACAACAT 6 28 0 GGACACATATACAAGCCTGTCAGTCATATA 14 16 1 GTCCGTGAACAACAGCCGGCTTAAAAGGGA 14 91 1 GGAAACCGGTAAAAGCCGGTGCGGTCCCGC 14 118 1 GAGCCAGGATACCTGCCTGTTTGATCAGCA 14 171 1 AACAACACAAAAAAGCCTATTGTTTACACA 14 223 0 AACGAACTAAAAAAGCATCTCTACGACGGT 14 265 0 ********** MAP Score: 2.85865 Motif 8 TCCAAAGGTATGAAAAAAATATGAACAATCTAT 0 111 0 CGTTGAATTACAAGCCGAAAGCGTTGAACAAGG 1 73 1 GAGCTCTTCTAAAAATAAAAGCGCGGTGTCAAG 1 156 0 CAAAAAAGACAAAATCGAAAACGATTTTGTCCT 2 14 0 GTGTGAAGAGAAAAACAAAAAAGACAAAATCGA 2 29 0 GAAGGAAAGCAATAGGGAAAAAGACTTTATAAG 2 68 0 AAAATGTCACAAAAATAAATGGGTCTAATTATC 2 117 0 TATATATGAAAATGATAAAAATGTCACAAAAAT 2 134 0 GGGAACAGCGTGAGGCAAGAAAGAAAGGAGTCA 3 168 1 AACAATTATAAAAGGCAATAAAGAGGAGGACCA 6 122 1 TCTTAATAAAAAGAGGAGTGCGGGGACAACCG 7 9 1 GAATGTGTTAAGAGGAGAAACGGTTGTCCCCGC 7 29 0 CGTTTTTTTGTATAAAAAAAACGCCCACATCAT 8 23 0 AAAAACCTTTAAAATGAAAACTGGCACTCTTAC 9 50 1 TTTCTTTCTGTAAATAGAAAAGGTGATGTT 9 93 1 AAGGGATAGTAAAGGGGAGTCAGTA 10 18 1 ATTATCGGTTAAAGTGAAATATGTCCGCTGAAA 11 40 1 TTTGTTACATTGAATGAAGAAAGGCTCGCTGTG 11 115 1 TGAAGAAGACAGAGTAAAATGGGAGGATGGAAG 12 84 1 CTATATTTCTAAAATAAAAAATGTAAATTTGTA 13 65 0 ATTTTAGAAATATAGCAAAAATGGGAATCGATT 13 83 1 AATTACTCCGAAAAACGGATACGAATGTCAAAT 14 50 1 CAGCCGGCTTAAAAGGGAAACCGGTAAAAGCCG 14 103 1 TCCTCCTAAACGAACTAAAAAAGCATCTCTACG 14 270 0 **** ***** * MAP Score: 2.68972 Motif 9 CGGTTGTTTTGATGCTTTTTTATATAATAGC 0 19 1 CCTCCGTATAGGTATTTTTATTGATAAGACC 0 184 0 GCGGTATTTTTCCTCTTTCTTGC 1 2 1 AGCTTGACACCGCGCTTTTATTTTTAGAAGA 1 154 1 TTTCGATTTTGTCTTTTTTGTTTTTCTCTTC 2 27 1 TTATTTTTGTGACATTTTTATCATTTTCATA 2 132 1 AAGGAGGGACGACACTTTTTTTAAAAAGCAT 2 259 1 AATGACGGCAGCTTTTTTTCCAC 3 2 0 GAGTGCAGTGCATATTTTTCCCACCCAAGGA 5 75 1 ACATGATGTGGGCGTTTTTTTTATACAAAAA 8 21 1 TAAATCAGTGCGTTTTTTTGTATAAAAAAAA 8 35 0 AGGTTTTTTCGACTTTTTTCTACAGATAACC 9 27 0 TTACTTGAGTGTCTTTTCTTTCTGTAAATAG 9 79 1 GATTACAAAGCATTCTTTTGTTACATTGAAT 11 99 1 AAAAGATAGGGGGACTTTTCTG 13 169 1 GTAAACAATAGGCTTTTTTGTGTTGTTTACA 14 226 1 CCGTCGTAGAGATGCTTTTTTAGTTCGTTTA 14 266 1 ********* * MAP Score: 2.1388