AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions025_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944241425 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yjaX 164 similar to 3-oxoacyl- acyl-carrier protein synthase #1 yjaY 22 similar to 3-oxoacyl- acyl-carrier protein synthase #2 yjaZ 75 yjaZ #3 appD 191 oligopeptide ABC transporter (ATP-binding protein) #4 appA 87 oligopeptide ABC transporter (oligopeptide-binding protein) #5 appB 75 oligopeptide ABC transporter (permease) #6 oppA 300 oligopeptide ABC transporter (binding protein) #7 oppB 107 oligopeptide ABC transporter (permease) #8 ykeA 168 alternate gene name: yzcA; similar to pyrroline-5-carboxylate reductase #9 dppA 128 dipeptide ABC transporter Motif 1 GTGATCGCCTCCTCTTTTAATCCTAT 2 59 0 TAGATATTCCCCCTCTTGAAATGTTCG 4 70 0 GAAAACGCTCTCCCTCCCCTTTAAGGGAAAT 5 10 0 AGCTCCCCTTTCCCCCCTCTTGTTGTCAAAC 3 167 0 GTAGTGTGCATACCCCCTCTCAAAGCTGTGC 4 18 0 GGAGAGCGTTTTCTCCCTCTTCTGTTTTTAA 5 28 1 AACGCTCCTCCTTTTTTACTAAATT 9 113 0 GCTAGCTCCCCTTTCCCCCCTCT 3 178 0 ACGCCTCCTTTCCATATACCAT 0 1 1 CTTGTGTGCACCTCACCTTTTT 1 3 0 ATACTTGTCCCCCTTTACTTTCCTT 5 60 0 TTATATTGCATTTTTCCTCTTTTTTTAATAT 9 63 1 ATATGGGGCTTTTCTCCCCATATACCTTGAG 7 33 0 CAAAAAAAACCGGCTACCCTTTAAGGGCAGC 2 23 0 ATAAAGGGATTGCTTTCTCTTGAAAACGTTT 3 140 1 CAAGCCAAACCGGCTGCCCTTAAAGGGTAGC 2 11 1 TCTAAACTATCAGTTCATCTTACTCATAGAG 0 33 0 * ********* MAP Score: 25.3363 Motif 2 CTAGCTCCCCTTTCCCCCCTCTTGTTGTCAAAC 3 167 0 TAGATATTCCCCCTCTTGAAATGTTCG 4 70 0 AGGGAGAGCGTTTTCTCCCTCTTCTGTTTTTAA 5 26 1 ATAATGAACTTGTTCACTCTATTGTTACAGCTT 6 152 1 CATGTTCACTCCGTTTCTCTATTTT 8 2 1 TATATGGGGCTTTTCTCCCCATATACCTTGAGG 7 32 0 GAGAAAACGCTCTCCCTCCCCTTTAAGGGAAAT 5 10 0 GTGATCGCCTCCTCTTTTAATCCTATG 2 58 0 ATATTGCATTTTTCCTCTTTTTTTAATATAATT 9 65 1 AGTGTACCGTTTTCCGCACTTTTTCACAATTTC 8 117 0 CTAATAATAATTTTCAGCTCCTTACGGCTAAAT 6 264 0 ACTTTTATTCTGTTCCGTCTTTTCTGATTATTT 6 193 0 ATACTTGTCCCCCTTTACTTTCCTTAT 5 58 0 AACGCTCCTCCTTTTTTACTAAATTA 9 112 0 CCTTAAAGGGTAGCCGGTTTTTTTTGTGTGCAT 2 28 1 GTACTAATTCTATCCTATTTTTTTTCACATGGC 0 74 0 * *** **** ** MAP Score: 20.2609 Motif 3 TTGCCATGTGAAAAAAAATAGGATAGAATTAGT 0 72 1 AAAATGATTGTAATAATATACAACTATAAAATT 3 74 1 CTTTATTCAGAAATAATAAATAATATTGAATTA 3 113 0 TGCTTTCTCTTGAAAACGTTTGACAACAAGAGG 3 150 1 CTTTCCTTATTAAAAACAGAAGAGGGAGAAAAC 5 35 0 TGGGCAGAAAACACATGAAAAAGTTTTT 6 5 1 TATTTTAAATTGATAAAATAATATTGCAATAAA 6 105 1 TTTACAAAAATAATCAGAAAAGACGGAACAGAA 6 186 1 GGCTACGTCTGAAAATAAAAGACCTCAAGGTA 7 9 1 TGATGGAGTATAAAAATGTAAAAACCATGGAGG 7 75 1 AATAGACATGTGAAAATAGAGAAACGGAGTGAA 8 14 0 ACTGTGGGATAAAAATGAAAAGATTATGGGAAA 8 88 1 AATCATTCAGTGATAAAAAAAGAATCCTCTTTC 9 16 0 CAAATTATATTAAAAAAAGAGGAAAAATGCAAT 9 67 0 CATAATTTAGTAAAAAAGGAGGAGCGTT 9 110 1 ****** * * ** MAP Score: 14.3593 Motif 4 TTGCCATGTGAAAAAAAATAGGATAGAATTAGT 0 72 1 AAGGATAAAATAATGGAATTTCATTAAT 3 5 1 AACGTTTGACAACAAGAGGGGGGAAAGGGGAGC 3 164 1 GAACGAACATTTCAAGAGGGGGAATATCTA 4 67 1 ATTTCCCTTAAAGGGGAGGGAGAGCGTTTTC 5 8 1 CCTTATTAAAAACAGAAGAGGGAGAAAACGCTC 5 31 0 TTTTAATAAGGAAAGTAAAGGGGGACAAGTAT 5 53 1 AATTTATGCTTTAAATGGTAGAAGGATATTATG 6 42 1 TTCATGGAAGAAAAACTAACGAAGTTTAAATAT 6 75 1 GGAACAGAATAAAAGTTGTGGAAACTCAGGTTC 6 210 1 ATAAAAATGTAAAAACCATGGAGGTGTTCCCCC 7 84 1 TATCATAAACAAAAACTGTGGGATAAAAATGAA 8 74 1 GGAAATTGTGAAAAAGTGCGGAAAACGGTACAC 8 116 1 AAATTATATTAAAAAAAGAGGAAAAATGCAATA 9 66 0 CATAATTTAGTAAAAAAGGAGGAGCGTT 9 110 1 ***** * **** MAP Score: 13.5569 Motif 5 ATACTAATAATTGATCACAACCTGATTGATCTTCTAA 0 110 1 GGAAGACTCCTTTATATCTTAAATTTAGAAGATCAAT 0 134 0 ATAGTTGTATATTATTACAATCATTTTGCAAAATCAA 3 64 0 TTCCCCCCTCTTGTTGTCAAACGTTTTCAAGAGAAAG 3 152 0 GGGAGAGCGTTTTCTCCCTCTTCTGTTTTTAATAAGG 5 27 1 AAACAAATAATTTATTGCAATATTATTTTATCAATTT 6 111 0 TATAATGAACTTGTTCACTCTATTGTTACAGCTTTTT 6 151 1 TTGTTACAGCTTTTTTACAAAAATAATCAGAAAAGAC 6 173 1 CCCATATACCTTGAGGTCTTTTATTTTCAGACGTAGC 7 11 0 CCGTTTCTCTATTTTCACATGTCTATTTATATTGATA 8 20 1 TATTGATAGGTTTATGACTTGAGTTTATCATAAACAA 8 49 1 TCTTTTCATTTTTATCCCACAGTTTTTGTTTATGATA 8 74 0 GGATTCTTTTTTTATCACTGAATGATTGAGATTTTTC 9 22 1 ATGATTGAGATTTTTCCCAGTTATATTGCATTTTTCC 9 43 1 GTTATATTGCATTTTTCCTCTTTTTTTAATATAATTT 9 62 1 ACGCTCCTCCTTTTTTACTAAATTATGAATATTCTAA 9 100 0 ***** ** * ** MAP Score: 12.9913 Motif 6 TCTATCCTATTTTTTTTCACATGGCAATATATTCGTCTAAACT 0 56 0 ACCTGATTGATCTTCTAAATTTAAGATATAAAGGAGTCTTCCC 0 129 1 AGCCGGTTTTTTTTGTGTGCATAGGATTAAAAGAGGAGGCGAT 2 39 1 TCATTAATAATATTACATTTATCCTAAAAAATTCTTGATTTTG 3 30 1 AATTCAATATTATTTATTATTTCTGAATAAAGGGATTGCTTTC 3 114 1 CCCCTCTTGTTGTCAAACGTTTTCAAGAGAAAGCAATCCCTTT 3 142 0 GAGAAAACGCTCTCCCTCCCCTTTAAGGGAAAT 5 0 0 GTTTTCTCCCTCTTCTGTTTTTAATAAGGAAAGTAAAGGGGGA 5 35 1 GGTAGAAGGATATTATGTTCATGGAAGAAAAACTAACGAAGTT 6 58 1 TGCAATAAATTATTTGTTTCATTATAATGAACTTGTTCACTCT 6 129 1 TTCACTCTATTGTTACAGCTTTTTTACAAAAATAATCAGAAAA 6 164 1 CATATACCTTTCTTACTGATGGAGTATAAAAATGTAAAAACCA 7 59 1 CTTGAAAGAGGATTCTTTTTTTATCACTGAATGATTGAGATTT 9 13 1 TATATTGCATTTTTCCTCTTTTTTTAATATAATTTGTTAGAAT 9 64 1 TTTGTTAGAATATTCATAATTTAGTAAAAAAGGAGGAGCGTT 9 96 1 * ** * * * *** * MAP Score: 12.179 Motif 7 CAGGTACTAATTCTATCCTATTTTTTTTCACATGGCAATA 0 70 0 ATCAATCAGGTTGTGATCAATTATTAGTATCAGGTACTAA 0 100 0 GATAAAATAATGGAATTTCATTAATAATATTACATTTATC 3 13 1 ATTACATTTATCCTAAAAAATTCTTGATTTTGCAAAATGA 3 41 1 TTTTCGATAATTCAATATTATTTATTATTTCTGAATAAAG 3 106 1 ATGTTCGTTCTTCTAGGCTGTTGTTTATGTAGTGTGCATA 4 37 0 ATGAAAAAGTTTTTAATCAATTTATGCTTTAAATGGTAGA 6 24 1 TAAAATAATATTGCAATAAATTATTTGTTTCATTATAATG 6 118 1 TTCTGTTCCGTCTTTTCTGATTATTTTTGTAAAAAAGCTG 6 179 0 GAACCTGAGTTTCCACAACTTTTATTCTGTTCCGTCTTTT 6 203 0 ATCCTTGAAAGAGGATTCTTTTTTTATCACTGAAT 9 5 1 TTTTTCCCAGTTATATTGCATTTTTCCTCTTTTTTTAATA 9 53 1 TAATATAATTTGTTAGAATATTCATAATTTAGTAAAAAAG 9 88 1 ** * *** ** * * MAP Score: 12.111 Motif 8 TGGTATATGGAAAGGAGGCGT 0 1 0 GCATAGGATTAAAAGAGGAGGCGATCAC 2 57 1 ACGTTTGACAACAAGAGGGGGGAAAGGGGA 3 165 1 AAGAGGGGGGAAAGGGGAGCTAGC 3 177 1 CACAGCTTTGAGAGGGGGTATGCACACTAC 4 19 1 GAACATTTCAAGAGGGGGAATATCTA 4 71 1 ATTTCCCTTAAAGGGGAGGGAGAGCGTTT 5 9 1 TATTAAAAACAGAAGAGGGAGAAAACGCTC 5 31 0 TAAGGAAAGTAAAGGGGGACAAGTAT 5 59 1 GATTTAGCCGTAAGGAGCTGAAAATTATTA 6 263 1 TTATATTAAAAAAAGAGGAAAAATGCAATA 9 66 0 ATTTAGTAAAAAAGGAGGAGCGTT 9 114 1 ********** MAP Score: 9.53335 Motif 9 TCATAGAGTATGGTATATGGAAAGGAGGCG 0 11 0 AATTTTATAGTTGTATATTATTACAATCAT 3 77 0 TTCTAGGCTGTTGTTTATGTAGTGTGCATA 4 37 0 GAAGGATATTATGTTCATGGAAGAAAAACT 6 62 1 AAAGACCTCAAGGTATATGGGGAGAAAAGC 7 27 1 TCAGTAAGAAAGGTATATGGGGCTTTTCTC 7 48 0 TTATATTGATAGGTTTATGACTTGAGTTTA 8 46 1 CCCACAGTTTTTGTTTATGATAAACTCAAG 8 66 0 ACACTTCATATTGTATATGAAAGGACTGAG 8 145 1 ********** MAP Score: 9.32072 Motif 10 TTAGACGAATATATTGCCATGTGAAAAAAAATAGGATAGAA 0 59 1 AACCTGATTGATCTTCTAAATTTAAGATATAAAGGAGTCTT 0 128 1 TCCTCTTTTAATCCTATGCACACAAAAAAAACCGGCTACCC 2 35 0 AAGGATAAAATAATGGAATTTCATTAATAATATTACATTT 3 9 1 TATTACAATCATTTTGCAAAATCAAGAATTTTTTAGGATAA 3 48 0 AATGATTGTAATAATATACAACTATAAAATTTTTCGATAAT 3 76 1 AGCAATCCCTTTATTCAGAAATAATAAATAATATTGAATTA 3 113 0 GTAGAAGGATATTATGTTCATGGAAGAAAAACTAACGAAGT 6 59 1 CGAAGTTTAAATATTTTAAATTGATAAAATAATATTGCAAT 6 94 1 AACAAGTTCATTATAATGAAACAAATAATTTATTGCAATAT 6 125 0 AAATGAAAAGATTATGGGAAATTGTGAAAAAGTGCGGAAAA 8 100 1 CTAACAAATTATATTAAAAAAAGAGGAAAAATGCAATATAA 9 63 0 ATTTGTTAGAATATTCATAATTTAGTAAAAAAGGAGGAGCG 9 95 1 ** * ** * ** ** MAP Score: 4.72366 Motif 11 ATATTGCCATGTGAAAAAAAATAGGATAGA 0 69 1 GACAACAAGAGGGGGGAAAGGGGAGCTAGC 3 171 1 ATTTCAAGAGGGGGAATATCTA 4 75 1 AAACAGAAGAGGGAGAAAACGCTCTCCCTC 5 25 0 GGAAAGTAAAGGGGGACAAGTAT 5 62 1 TGGGCAGAAAACACATGAAAAA 6 2 1 TTATGTTCATGGAAGAAAAACTAACGAAGT 6 70 1 AATAAAAGTTGTGGAAACTCAGGTTCATTT 6 217 1 CAAGGTATATGGGGAGAAAAGCCCCATATA 7 35 1 GGGGGAACACCTCCATGGTT 7 97 0 CAAAAACTGTGGGATAAAAATGAAAAGATT 8 83 1 CAATCATTCAGTGATAAAAAAAGAATCCTC 9 20 0 CAATATAACTGGGAAAAATCTCAATCATTC 9 41 0 ********** MAP Score: 4.5929