AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions026_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241441
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yjcI	300	similar to cystathionine gamma-synthase
#1	yrhA	64	similar to cysteine synthase
#2	yrrT	192	yrrT
#3	ytkP	148	similar to cysteine synthase
#4	yurH	300	similar to N-carbamyl-L-amino acid amidohydrolase

Motif 1
AAGGGCCAGTCCCTCCACCTCTCACGATAA	0	125	0
   GTCTTGACCCTCCAGCTTTCACAAGTC	2	7	1
AGCGTTAAACCCCTTCTTCTTATGAAGAAG	0	245	1
     ATATGTCCTCCTCCTTAATAGAGGT	1	49	0
AGGGGTTTAACGCTTCTTCTTATCTTCCAA	0	229	0
CGAACATCGCCTCTCCAGCTTAGCTTGTTC	4	56	1
CCCTCTCTTTCGCTCTTGCTGGCTCTCTTC	4	104	1
ACTATCATGTTGCTCCTTCTATAATGAAGT	4	253	1
CTCTTGCTGGCTCTCTTCCTTACCGTGTTT	4	116	1
AAATAAAAACCCCTTCTTCATAAGAAGAAG	0	257	0
GGGGAGAACGTTCTCCTCCGTTTTTCTCTA	1	13	1
          **********
MAP Score: 16.5904

Motif 2
GTTTATTTCAACACTTTTTTCTTCGTGTGC	0	46	0
AGCGCAATTCACAGTTTATTTCAACACTTT	0	59	0
AAATCCAGCAAGCGTTTTTTATGCTTGGAA	0	205	1
GAAGGGGTTTAACGCTTCTTCTTATCTTCC	0	231	0
GAAGCGTTAAACCCCTTCTTCTTATGAAGA	0	243	1
CAAAATAAAAACCCCTTCTTCATAAGAAGA	0	259	0
CTCTAAAAACAACCTCTATTAAGGAGGAGG	1	38	1
TAAAATACACAAAGTGTTTTAGTACCTGCT	2	85	1
   CCGTCTGACACTCCCTTCTTTGACAGC	3	7	1
CTCTATCCGCACAGCCTCTTTATTGATAAA	3	43	0
CGTTTGTGCGAGAGTGTTTTCATACACTGT	3	75	0
CTCTCGCACAAACGTTTATTATGTTAGGAT	3	91	1
ATATTATATGACACTTGTTTTATTCAGAAA	3	119	1
AGGCATTTTGACCCTCTCTTTCGCTCTTGC	4	93	1
TCTCTTCCTTACCGTGTTTTCTTTTGACCT	4	127	1
CTAAAAAATAAACGTTTTTTTGGTTAATCT	4	215	1
          **********
MAP Score: 13.983

Motif 3
GTTTATTTCAACACTTTTTTCTTCGTGTGCCGA	0	43	0
GAAGGGGTTTAACGCTTCTTCTTATCTTCCAAG	0	228	0
GAAGCGTTAAACCCCTTCTTCTTATGAAGAAGG	0	243	1
CAAAATAAAAACCCCTTCTTCATAAGAAGAAGG	0	256	0
   ATAGCTGACACCTTCCCTTTTCAAAATAAA	0	280	0
ACGGAGGAGAACGTTCTCCCCGTT         	1	1	0
GGGAGAACGTTCTCCTCCGTTTTTCTCTAAAAA	1	14	1
        ATATGTCCTCCTCCTTAATAGAGGT	1	49	0
TATTATAGGAACTGTTCCATCATTAATCCATAG	2	130	1
   CCGTCTGACACTCCCTTCTTTGACAGCTAT	3	7	1
CTCTATCCGCACAGCCTCTTTATTGATAAAATA	3	40	0
GTTTTCATACACTGTTCCTCTATCCGCACAGCC	3	57	0
TTCCGCGAACATCGCCTCTCCAGCTTAGCTTGT	4	51	1
AGGCATTTTGACCCTCTCTTTCGCTCTTGCTGG	4	93	1
        GTACTCCCCCCTCTGGCCGCTATGG	4	285	0
          ** ***** ** *
MAP Score: 11.7559

Motif 4
AGGGCCAGTCCCTCCACCTCTCACGATAAGA	0	123	0
CTAAATCCAGCAAGCGTTTTTTATGCTTGGA	0	203	1
AAGGGGTTTAACGCTTCTTCTTATCTTCCAA	0	229	0
AAGAAGCGTTAAACCCCTTCTTCTTATGAAG	0	241	1
TTCAAAATAAAAACCCCTTCTTCATAAGAAG	0	260	0
ATAGCTGACACCTTCCCTTTTCAAAATAAAA	0	279	0
AGAACGTTCTCCTCCGTTTTTCTCTAAAAAC	1	17	1
  CCGTCTGACACTCCCTTCTTTGACAGCTA	3	8	1
CTCTATCCGCACAGCCTCTTTATTGATAAAA	3	42	0
       TGTCATTCCTTTCTGAATAAAACA	3	134	0
TTGCGGGCTGCCGGCATTTCTGTTTTCATCC	4	19	1
CGTTCCGCGAACATCGCCTCTCCAGCTTAGC	4	49	1
AGGCATTTTGACCCTCTCTTTCGCTCTTGCT	4	93	1
       GTACTCCCCCCTCTGGCCGCTATG	4	286	0
          ** ********
MAP Score: 6.38769

Motif 5
CAACACTTTTTTCTTCGTGTGCCGAACCGTTTAAAGAG	0	30	0
TTGAAATCGATATTTCTTATCGTGAGAGGTGGAGGGAC	0	109	1
AACCGGCTTGTTTTGCATTTGCAAAGCGCCAAGGTGCT	0	167	1
GGTTTAACGCTTCTTCTTATCTTCCAAGCATAAAAAAC	0	218	0
GTTAAACCCCTTCTTCTTATGAAGAAGGGGTTTTTATT	0	248	1
GAAGAAGGGGTTTTTATTTTGAAAAGGGAAGGTGTCAG	0	268	1
AAAAAGCTTATACTTCATATGACTTGTGAAAGCTGGAG	2	19	0
TTATAGGAATTATTAAATATGGAGTGTGACAAAT    	2	168	1
CCAGCTTAGCTTGTTCATATGAAAGGCATTTTGACCCT	4	70	1
          ** *** * **    * *
MAP Score: 3.99221

Motif 6
TAAAAAACGCTTGCTGGATTTAGCACCTTG	0	196	0
 GTCCTGTTTTTGCGGGCTGCCGGCATTTC	4	9	1
TCTTTCGCTCTTGCTGGCTCTCTTCCTTAC	4	109	1
GTGTATCTGGTTGCTGGATGGATACTGTGG	4	185	1
          **********
MAP Score: 3.66889

Motif 7
CTCAGCAACCGGCTTGTTTTGCATTTGCAAA	0	161	1
ATCCAGCAAGCGTTTTTTATGCTTGGAAGAT	0	207	1
GTTAAACCCCTTCTTCTTATGAAGAAGGGGT	0	248	1
GAAGAAGGGGTTTTTATTTTGAAAAGGGAAG	0	268	1
AAACACTTTGTGTATTTTATGCCATCTCATA	2	73	0
CTCGCACAAACGTTTATTATGTTAGGATATT	3	93	1
TCCTTACCGTGTTTTCTTTTGACCTTTACAT	4	132	1
ACCAAAAAAACGTTTATTTTTTAGCCACAGT	4	208	0
          ***** *****
MAP Score: 3.35583

Motif 8
TAAATCCAGCAAGCGTTTTTTATGCTTGGA	0	204	1
CTTATGAAGAAGGGGTTTTTATTTTGAAAA	0	263	1
TATGAAGTATAAGCTTTTTTGCGGTCAATG	2	38	1
AAAATACACAAAGTGTTTTAGTACCTGCTT	2	86	1
ACTCTCGCACAAACGTTTATTATGTTAGGA	3	90	1
TTCATATGAAAGGCATTTTGACCCTCTCTT	4	83	1
GCTAAAAAATAAACGTTTTTTTGGTTAATC	4	214	1
          **********
MAP Score: 1.06923