AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions026_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241461
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yjcI	300	similar to cystathionine gamma-synthase
#1	yrhA	64	similar to cysteine synthase
#2	yrrT	192	yrrT
#3	ytkP	148	similar to cysteine synthase
#4	yurH	300	similar to N-carbamyl-L-amino acid amidohydrolase

Motif 1
TTATCGTGAGAGGTGGAGGGACTGGCCCTT	0	125	1
TTGGAAGATAAGAAGAAGCGTTAAACCCCT	0	229	1
CTTCTTCATAAGAAGAAGGGGTTTAACGCT	0	245	0
CTTCTTCTTATGAAGAAGGGGTTTTTATTT	0	257	1
TAGAGAAAAACGGAGGAGAACGTTCTCCCC	1	13	0
ACCTCTATTAAGGAGGAGGACATAT     	1	49	1
GACTTGTGAAAGCTGGAGGGTCAAGAC   	2	7	0
TAATAGCTGTCAAAGAAGGGAGTGTCAGAC	3	12	0
GAACAAGCTAAGCTGGAGAGGCGATGTTCG	4	56	0
CCAGCAAGAGCGAAAGAGAGGGTCAAAATG	4	96	0
AAACACGGTAAGGAAGAGAGCCAGCAAGAG	4	116	0
ACTTCATTATAGAAGGAGCAACATGATAGT	4	253	0
CCATAGCGGCCAGAGGGGGGAGTAC     	4	285	1
          **********
MAP Score: 15.2953

Motif 2
TCGGCACACGAAGAAAAAAGTGTTGAAATAAAC	0	43	1
AAAAAAGTGTTGAAATAAACTGTGAATTGCGCT	0	56	1
CTTGGAAGATAAGAAGAAGCGTTAAACCCCTTC	0	228	1
CCTTCTTCATAAGAAGAAGGGGTTTAACGCTTC	0	243	0
CCTTCTTCTTATGAAGAAGGGGTTTTTATTTTG	0	256	1
TTTATTTTGAAAAGGGAAGGTGTCAGCTAT   	0	280	1
GGTTGTTTTTAGAGAAAAACGGAGGAGAACGTT	1	19	0
AAGTCATATGAAGTATAAGCTTTTTTGCGGTCA	2	32	1
ATGGCATAAAATACACAAAGTGTTTTAGTACCT	2	79	1
ATATGTGGTATTATAGGAACTGTTCCATCATTA	2	122	1
AGGAATTATTAAATATGGAGTGTGACAAAT   	2	172	1
ATAGCTGTCAAAGAAGGGAGTGTCAGACGG   	3	7	0
TTTATTGATAAAATAATAGCTGTCAAAGAAGGG	3	22	0
TATTTTATCAATAAAGAGGCTGTGCGGATAGAG	3	40	1
CTGTGCGGATAGAGGAACAGTGTATGAAAACAC	3	59	1
GAAAACACTCTCGCACAAACGTTTATTATGTTA	3	84	1
TCCTTTCTGAATAAAACAAGTGTCATATAATAT	3	119	0
TAAAGGTCAAAAGAAAACACGGTAAGGAAGAGA	4	127	0
AATAGTTGTGACATGTAGGGTGTATCTGGTTGC	4	166	1
ACTGTGGCTAAAAAATAAACGTTTTTTTGGTTA	4	208	1
          * * * *******
MAP Score: 13.3387

Motif 3
AGTTTATTTCAACACTTTTTTCTTCGTGTGCCGA	0	43	0
AGAAAATTGAAATCGATATTTCTTATCGTGAGAG	0	103	1
TAAATCCAGCAAGCGTTTTTTATGCTTGGAAGAT	0	204	1
AGAAGGGGTTTAACGCTTCTTCTTATCTTCCAAG	0	228	0
AGAAGCGTTAAACCCCTTCTTCTTATGAAGAAGG	0	242	1
TCTTATGAAGAAGGGGTTTTTATTTTGAAAAGGG	0	262	1
TCCTCCTTAATAGAGGTTGTTTTTAGAGAAAAAC	1	32	0
TTGACCGCAAAAAAGCTTATACTTCATATGACTT	2	32	0
ACTCTCGCACAAACGTTTATTATGTTAGGATATT	3	90	1
CTCTCTTCCTTACCGTGTTTTCTTTTGACCTTTA	4	126	1
TTAACCAAAAAAACGTTTATTTTTTAGCCACAGT	4	208	0
          ** ** ** ** **
MAP Score: 13.3272

Motif 4
        GTACTCCCCCCTCTGGCCGCTAT	4	287	0
AGGCATTTTGACCCTCTCTTTCGCTCTTGCT	4	93	1
   CCGTCTGACACTCCCTTCTTTGACAGCT	3	7	1
CAAAATAAAAACCCCTTCTTCATAAGAAGAA	0	258	0
GAAGCGTTAAACCCCTTCTTCTTATGAAGAA	0	243	1
AACGGGGAGAACGTTCTCCTCCGTTTTTCTC	1	10	1
CTCTATCCGCACAGCCTCTTTATTGATAAAA	3	42	0
TCGCTCTTGCTGGCTCTCTTCCTTACCGTGT	4	113	1
 ATAGCTGACACCTTCCCTTTTCAAAATAAA	0	280	0
TCTAAGGGCCAGTCCCTCCACCTCTCACGAT	0	127	0
     ATATGTCCTCCTCCTTAATAGAGGTT	1	48	0
TTCTCTAAAAACAACCTCTATTAAGGAGGAG	1	36	1
TTATTAGAAATTTCTCTCTTTAAACGGTTCG	0	15	1
TTTCATACACTGTTCCTCTATCCGCACAGCC	3	57	0
          ** ********
MAP Score: 10.078

Motif 5
CACAGTTTATTTCAACACTTTTTTCTTCGTGTGC	0	46	0
AGAAGAAGCGTTAAACCCCTTCTTCTTATGAAGA	0	239	1
TTTTCAAAATAAAAACCCCTTCTTCATAAGAAGA	0	259	0
     ATAGCTGACACCTTCCCTTTTCAAAATAA	0	281	0
GGGGAGAACGTTCTCCTCCGTTTTTCTCTAAAAA	1	13	1
        ATATGTCCTCCTCCTTAATAGAGGTT	1	48	0
      GTCTTGACCCTCCAGCTTTCACAAGTCA	2	4	1
     ATTTGTCACACTCCATATTTAATAATTCC	2	173	0
       CCGTCTGACACTCCCTTCTTTGACAGC	3	3	1
TGAAAGGCATTTTGACCCTCTCTTTCGCTCTTGC	4	89	1
TCGCTCTTGCTGGCTCTCTTCCTTACCGTGTTTT	4	113	1
          *   ***** ****
MAP Score: 3.72197

Motif 6
CAACACTTTTTTCTTCGTGTGCCGAACCGTT	0	37	0
AACCGGCTTGTTTTGCATTTGCAAAGCGCCA	0	167	1
GGTTTAACGCTTCTTCTTATCTTCCAAGCAT	0	225	0
GTTAAACCCCTTCTTCTTATGAAGAAGGGGT	0	248	1
GAAGAAGGGGTTTTTATTTTGAAAAGGGAAG	0	268	1
AAAAAGCTTATACTTCATATGACTTGTGAAA	2	26	0
CCAGCTTAGCTTGTTCATATGAAAGGCATTT	4	70	1
TCCTTACCGTGTTTTCTTTTGACCTTTACAT	4	132	1
          ****** ****
MAP Score: 3.33346

Motif 7
CGAACCGTTTAAAGAGAGAAATTTCTAATA	0	16	0
TTTCTTATCGTGAGAGGTGGAGGGACTGGC	0	121	1
CTGAGGTTTCTAAGGGCCAGTCCCTCCACC	0	136	0
TTCTTCATAAGAAGAAGGGGTTTAACGCTT	0	244	0
TTCTTCTTATGAAGAAGGGGTTTTTATTTT	0	258	1
TTTTTATTTTGAAAAGGGAAGGTGTCAGCT	0	278	1
CAACCTCTATTAAGGAGGAGGACATAT   	1	47	1
TGTGAAAGCTGGAGGGTCAAGAC       	2	3	0
CCACATATTCTGAAAAGCAGGTACTAAAAC	2	100	0
GTCAAAGAAGGGAGTGTCAGACGG      	3	4	0
TTTTATCAATAAAGAGGCTGTGCGGATAGA	3	42	1
CTGTGCGGATAGAGGAACAGTGTATGAAAA	3	59	1
AAGCTAAGCTGGAGAGGCGATGTTCGCGGA	4	52	0
AGAGCGAAAGAGAGGGTCAAAATGCCTTTC	4	90	0
ACGGTAAGGAAGAGAGCCAGCAAGAGCGAA	4	112	0
CTTCATTATAGAAGGAGCAACATGATAGTT	4	252	0
CATAGCGGCCAGAGGGGGGAGTAC      	4	286	1
          **********
MAP Score: 2.00685