AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions031_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241698
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	sacC	156	levanase
#1	sacB	300	levansucrase
#2	yveB	73	similar to levanase
#3	hisZ	250	histidyl-tRNA synthetase
#4	sacP	300	phosphotransferase system (PTS) sucrose-specific enzyme IIBC component

Motif 1
CTGCAGCAGTCTTTTCATATATAAATCATTCG	0	35	1
CTTCGCTCCTCTCTTCATGTTTGAACACTTTC	0	128	0
TCTGCAAATCCTTTTATGATTTTCTATCAAAC	1	24	1
CAACTGGTCTATTTTCCTCTTTTGTTTGATAG	1	47	0
CCCTTTACACATTTTAGGTCTTGCCTGCTTTA	1	141	0
CCCCTTACATATTTTAGGTCTTTTTTTATTGT	1	195	1
TTGGCATTTTCTTTTATTTCTTATCAACATAA	2	38	1
TTAAGCGTTGATTTTCATTCTTTCATCTGCTA	3	154	1
AGGATTCGGAATTTTCCTTCATAAGATAACAG	3	211	1
        GTCTTTTCCTGCTTTCTTTCATGA	4	2	1
ATTTACGCAAATTTTAGGTCTTGCCTGCTTTA	4	202	0
TCGTTGGCGAATTTTAGGTCTTTTTTGTTTAA	4	259	1
          ****** * ***
MAP Score: 18.2222

Motif 2
GTTACTGATAAAGCAGGCAAGACCTAAAATGT	1	133	1
GTGACTGGTAAAGCAGGCAAGACCTAAAATTT	4	194	1
TCATGAAAGAAAGCAGGAAAAGAC        	4	2	0
TTTGATAGAAAATCATAAAAGGATTTGCAGAC	1	23	0
TACTATGCTCAATCATGAAAGAAAGCAGGAAA	4	14	0
GATAACAGTGAAACAGAGGAGAATTGCCAGAA	0	67	1
CCTTTTATTTAAACAAAAAAGACCTAAAATTC	4	267	0
GAAAGTGTTCAAACATGAAGAGAGGAGCGAAG	0	128	1
ATTTTCTATCAAACAAAAGAGGAAAATAGACC	1	42	1
AATAGAGAACAAGGAGATAAAG          	3	0	0
CTATAATACAAATCAAATAGAGAACAAGGAGA	3	15	0
ATAGCATGCCAAACATAAAGAATTTGAGATAT	3	43	1
ATTTTTTCATAATGAGGAGAAGGATATTTGAA	3	101	1
TGTGTGAAGGAAAGAGAGAGAAACTGCAGCAG	0	12	1
AATTTGCGTAAATGAAAAAGGATCGCTGTGTC	4	221	1
TGCCATCTTCAAACAGGAGGGCTGGAAGAAGC	1	239	1
AAAAGACCTAAAATATGTAAGGGGTGACGCCA	1	187	0
GTACATAAAAAAGGAGACATGAACG       	1	285	1
ATTATGAAAAAATCATGAATAATGTATTAAAG	3	82	0
          ** **** ****
MAP Score: 17.422

Motif 3
CCTTTTATTTAAACAAAAAAGACCTAAAATTCG	4	266	0
AGTTACGCACAATAAAAAAAGACCTAAAATATG	1	202	0
TATGTTGATAAGAAATAAAAGAAAATGCCAATA	2	36	0
GTTTGAACACTTTCAAAAGAGACTGCTGCGCAA	0	109	0
TACTATGCTCAATCATGAAAGAAAGCAGGAAAA	4	13	0
GTTACTGATAAAGCAGGCAAGACCTAAAATGTG	1	133	1
GTGACTGGTAAAGCAGGCAAGACCTAAAATTTG	4	194	1
CATGAAAGAAAGCAGGAAAAGAC          	4	0	0
ACCAGTTGCAATCCAAACGAGAGTCTAATAGAA	1	71	1
GATAACAGTGAAACAGAGGAGAATTGCCAGAAA	0	67	1
 GGTGTGTGAAGGAAAGAGAGAGAAACTGCAGC	0	9	1
          AAACGCAAAAGAAAATGCCGATA	2	0	1
TGATTTTCTATCAAACAAAAGAGGAAAATAGAC	1	40	1
AAATTCGCCAACGAATAAAGGACACAGCGATCC	4	240	0
ACACAGTACATAAAAAAGGAGACATGAACG   	1	280	1
AAAGTGTTCAAACATGAAGAGAGGAGCGAAGGA	0	129	1
GAATGATTTATATATGAAAAGACTGCTGCAGTT	0	33	0
TTTGATAGAAAATCATAAAAGGATTTGCAGACT	1	22	0
TGATTTTTTCATAATGAGGAGAAGGATATTTGA	3	99	1
TTGTTTAAATAAAAGGGGGAGAAATAG      	4	283	1
TATAATACAAATCAAATAGAGAACAAGGAGATA	3	13	0
          *  ** *******
MAP Score: 14.9949

Motif 4
CACAGCGATCCTTTTTCATTTACGCAAATTTT	4	219	0
ATTAAGAATACGCTTTCATCATAAATCATGAT	4	146	0
CTATTTCTCCCCCTTTTATTTAAACAAAAAAG	4	278	0
TTGATTTTCATTCTTTCATCTGCTAACATATT	3	161	1
ACTGCAGCAGTCTTTTCATATATAAATCATTC	0	34	1
TTTTCCTGCTTTCTTTCATGATTGAGCATAGT	4	13	1
TTCATGTCTCCTTTTTTATGTACTGTGTTAGC	1	276	0
TTATTCATGATTTTTTCATAATGAGGAGAAGG	3	92	1
  ATGGGATTCACCTTTATGTTGATAAGAAAT	2	53	0
ATCATGATAGCGTTTTCGTCAACTATTTTTTT	4	122	0
CCTTCGCTCCTCTCTTCATGTTTGAACACTTT	0	129	0
AGTCTGCAAATCCTTTTATGATTTTCTATCAA	1	22	1
GTCTATTTTCCTCTTTTGTTTGATAGAAAATC	1	41	0
ATCCTATTGGCATTTTCTTTTATTTCTTATCA	2	32	1
TTGGCGTCACCCCTTACATATTTTAGGTCTTT	1	186	1
AGGATATCGGCATTTTCTTTTGCGTTT     	2	5	0
ATTCGGAATTTTCCTTCATAAGATAACAGCGG	3	214	1
ATATTTTAGGTCTTTTTTTATTGTGCGTAACT	1	203	1
TACGAATTTTTGTCTACATGTTATATCAAACT	4	82	1
          * ******* **
MAP Score: 11.6551

Motif 5
     GGTGTGTGAAGGAAAGAGAGAGAAA	0	5	1
TAACAGTGAAACAGAGGAGAATTGCCAGAA	0	69	1
CTATCAAACAAAAGAGGAAAATAGACCAGT	1	47	1
GTTACTGATAAAGCAGGCAAGACCTAAAAT	1	133	1
TGCCATCTTCAAACAGGAGGGCTGGAAGAA	1	239	1
GGAGGGCTGGAAGAAGCAGACCGCTAACAC	1	254	1
ACAGTACATAAAAAAGGAGACATGAACG  	1	282	1
TTGATAAGAAATAAAAGAAAATGCCAATAG	2	35	0
TCTTATCAACATAAAGGTGAATCCCAT   	2	56	1
TCAAATAGAGAACAAGGAGATAAAG     	3	5	0
ATTTTTTCATAATGAGGAGAAGGATATTTG	3	101	1
CTGTTATCTTATGAAGGAAAATTCCGAATC	3	213	0
TCATGAAAGAAAGCAGGAAAAGAC      	4	4	0
GTGACTGGTAAAGCAGGCAAGACCTAAAAT	4	194	1
GTTTAAATAAAAGGGGGAGAAATAG     	4	285	1
          **********
MAP Score: 10.8752

Motif 6
AGGAAAGAGAGAGAAACTGCAGCAGTCTTT	0	19	1
TTTATATATGAAAAGACTGCTGCAGTTTCT	0	30	0
ACACTTTCAAAAGAGACTGCTGCGCAAGCT	0	106	0
  AAACGCAAAAGAAAATGCCGATATCCTA	2	8	1
TAAGAAATAAAAGAAAATGCCAATAGGATA	2	31	0
TATCTTATGAAGGAAAATTCCGAATCCTTT	3	209	0
TAACATGTAGACAAAAATTCGTAAAAATTA	4	75	0
AAAATAGTTGACGAAAACGCTATCATGATT	4	125	1
TATTCAGATTAAGAATACGCTTTCATCATA	4	155	0
          **********
MAP Score: 7.03486

Motif 7
GAGAAACTGCAGCAGTCTTTTCATATATAAATCATTC	0	29	1
CAGCTTGCGCAGCAGTCTCTTTTGAAAGTGTTCAAAC	0	105	1
TTACTGATAAAGCAGGCAAGACCTAAAATGTGTAAAG	1	134	1
GGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAA	1	258	1
TTTGTATTATAGCATGCCAAACATAAAGAATTTGAGA	3	35	1
TGACTGGTAAAGCAGGCAAGACCTAAAATTTGCGTAA	4	195	1
          ***** *   **  * *
MAP Score: 6.7439

Motif 8
CTGCAAATCCTTTTATGATTTTCTATCAAACAAAAG	1	25	1
AACTGGTCTATTTTCCTCTTTTGTTTGATAGAAAAT	1	42	0
CCCTTACATATTTTAGGTCTTTTTTTATTGTGCGTA	1	196	1
   CGTTCATGTCTCCTTTTTTATGTACTGTGTTAG	1	277	0
GCCAATAGGATATCGGCATTTTCTTTTGCGTTT   	2	7	0
GCCGATATCCTATTGGCATTTTCTTTTATTTCTTAT	2	26	1
         CTTTATCTCCTTGTTCTCTATTTGATT	3	1	1
       GTCTTTTCCTGCTTTCTTTCATGATTGAG	4	3	1
CACAATTAATTTTTACGAATTTTTGTCTACATGTTA	4	69	1
TGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAAT	4	114	0
GTTGGCGAATTTTAGGTCTTTTTTGTTTAAATAAAA	4	261	1
     CTATTTCTCCCCCTTTTATTTAAACAAAAAA	4	279	0
          ***  *  **** * *
MAP Score: 6.17717

Motif 9
CCCTTTACACATTTTAGGTCTTGCCTGCTTTA	1	141	0
GACCTAAAATATGTAAGGGGTGACGCCAAAGT	1	183	0
CCCCTTACATATTTTAGGTCTTTTTTTATTGT	1	195	1
ATTTACGCAAATTTTAGGTCTTGCCTGCTTTA	4	202	0
TCGTTGGCGAATTTTAGGTCTTTTTTGTTTAA	4	259	1
          ** * *******
MAP Score: 5.71363